Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g0525 ATGGGGTCCGGTAATGGGTTATGTTCAAAAGAGTTTGATTTGGATGCTAAGTGGCTGGTCGATCCGAAGCAAATCTTTGTTGGGCCAAGGATTGGGGAGGGCGCGCATGGCAAAGTGCACAAGGGGAAATATAAAGACCAAAATGTTGCAATTAAAATAATTCGGAAAGGTGAAACCCCAGAAGATATTGCGAAAACTGAGGCACGCTTTGCTCGGGAGGTTGCTATGTTATCCAAAGTTCAACACAAGAATCTTGCGAAGTTTATAGGTGCTTGCAAGGAGCCTATTATGGTGATAGTGACTGAGCTTCTTTTAGGCGGTACATTAAGGAAGTACCTGTTGAGTATAAGGCCAAGGTGCTTGGACTTCAATGAGGCAGTTGGCTTTGCACTTGATATTGCACGTGCAATGGAATGCTTGCATTCGCATGGCATCATTCACCGTGACCTCAAGCCTGAGAATTTGATCTTGACTGCAGACCACAAAACTGTTAAACTTGCTGATTTTGGTCTTGCTAGAGAAGAGTCGGTAACAGAGATGATGACGGCTGAAACTGGGACTTACAGATGGATGGCTCCAGAGCTATACAGTACAGTAACTTTACGAAATGGAGAGAAGAAGCATTACAATCACAAGGTGGATGTTTACAGCTTTGGAATTGTATTCTGGGAGATTATCCAAAACAAGTTGCCTTTCGAAGGCATGTCAAATCTACAAGCAGCATATGCAGCTGCTTTTAAGAATTTACGACCGACTGCTGAGAACCTCCCACCGGATTTAGCACCGATTGTGACTTCCTGTTGGACAGAGAACCCAAACGATCGGCCTAACTTCAACCAAATCATACAAATGCTCTTGAAATGTCTATCCACCATTCCACAACCAGAGTATGTTGCACCACCACCATTGATGCACCCACCTGAAAATGCAGTTTTGCCACCAGAGTCTCCTGGAACTAGTTCTTTGATGGCAGCCACAAGACATGGCACGAGGGAAGTCCTGAACAGCGAGATGGAAGAGAAACCGAGTAGTTTCTTCTCGTGTTTCACTGACATTACATTTAACTCGTTTTCCGAACCAACATATCCTTCCACCGGACACCCCAGCTTCGTCTTCCGTACCTCGGCCTCGGTCCTAGCTTCCGTCAACGCTGGGCCCATATCCATTAACAACCCCCTCCATGCTTCCCACTTCGCTCTGTTCCCGAGCCTATGGTCTGGCACACGAGCCTCCACCGAACCAGGGGCTCAGTTTTCCCGCTCACACTCAGCTCTTGAAGAATATGGCAAGAATGATGAGATTGAGAATGTGTGGAGTTTACTTCGTTGTGTGGACTGTGCACATTTATCTCCAACAAAAGTGGTTGGAACTGTAACTGTAAATCCATCCAATGTTCTGTCTAAAATGATGTTTATCATGTCTTGGATAATCGATAGCCGAACAATTGCAAGAAAAGTCAGGAACATCAGTCAATCTTCTTCACAAGTAATTAAAGATTGTGATGCGAAACGAGAATGTCCAAACTGTCACTTTATTATTGATAATACAGATGTTTCTCCTGAATGGCCTGGATTGCCTGCAGGAGTAAAGTTTGATCCAACTGATGAAGAAATAATGGAGCACTTAGCAGCCAAGTGCACTGTTGGAAACTTAAAGCCACATGCATTAATTGATGAATTCATTCCCACACTTGAAACAGACCAAGGAATCTGTTACACGCATCCAGAAAATCTCCCCGGTGTTAGTAAAGATGGAAATGATGTCCATTTCTTCCATAAAACAAGCAATGCATATTCCACGGGTCAAAGGAAGCGTCGCAAGATTGAAAGTGAACATAATTCAAGCCTCGAACATTTTCGCTGGCACAAGACAGGTAAGACCAAGGCTGTGATAGAAAATGGTGTTCATAAGGGATGGAAGAAGATCTTCTCTCTGTATAGAAGTTCGAAGGGAGGCTCGAAGCCCCAAAAGTCTAATTGGGTGATACATCAATATCATTTGGGAACTGAAGAAGATGAGAAGGAAGGTGAATACGTTTTATCAAAGATTTCTTATCAGCAGCCAAAGCAATGTATTAAGAGTAGTGATAATATGCTCATTGAGGATTTTGATGCTATGCTGCATCAAACAAGTCCAAGAACTCCCAAGTCGAATCCTCCGATTCCACCTCGATCAGGAAAATCACTTGTCTCCAATGCTGTTGCTGACAACAGTCTGCCTCAGTCATTTGCAAAGGAAGAAGAGTCAACTCCGGAGGCATCTCGTGTTTCTTATCCAAATATTTCATCAGAGAACGACACAGGATACCATGATTGGTTGGCCGGAGAATCTCAGGATATAGATGATGTTGGATTACATTACTTGGAAGACAACTTATTGTGCAATGAAGTCCTAGATTCTAGTGCTTTTATAAGTAACAACCAAGTAAATCAAATGCCTTTCCCTCTCTCTGGTAGCAACGCTTACCACGAGATTGCAAATGACAACGTTCCATGTGGAATTGCAGACCTTGTGAACCTTGAACTAGATACTCCACCTGATTTTCATCTGGCTACTCTTATTATTGCTTGCAGGACCTGCAGTTTGGTTCTCAAGAGAGCATTTTCGACTGGATCGATAGGATATGAACTGAATGTTGAAGCAAATTCTAATGAGAATGACATGTTACAATCTGACTTTTCTGCCCCCGAATCTTCCTTGAATTCACCATCTTTCATCGTAAAACTCTTTGCAATCATTTGGCTTTCATTTGTATGGGGAATGCCATGCATGTCGCCTGTTGGAAGTCGGTTAAACTTCAAAATTCGAATGACACGTAACAACTTACGAACATATCTATCAGTTGTTTCTCACGGTCAAGTCATCGAATCAAGAACAACCGCAACGGATCCAGTGATGAAGCTGCCTGAAATCGCAAAACCCTTACCGGTCGGCGGTGGTAACTTGGGAATGGAGATGAGTGATTGA 2967 43.28 MGSGNGLCSKEFDLDAKWLVDPKQIFVGPRIGEGAHGKVHKGKYKDQNVAIKIIRKGETPEDIAKTEARFAREVAMLSKVQHKNLAKFIGACKEPIMVIVTELLLGGTLRKYLLSIRPRCLDFNEAVGFALDIARAMECLHSHGIIHRDLKPENLILTADHKTVKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLRNGEKKHYNHKVDVYSFGIVFWEIIQNKLPFEGMSNLQAAYAAAFKNLRPTAENLPPDLAPIVTSCWTENPNDRPNFNQIIQMLLKCLSTIPQPEYVAPPPLMHPPENAVLPPESPGTSSLMAATRHGTREVLNSEMEEKPSSFFSCFTDITFNSFSEPTYPSTGHPSFVFRTSASVLASVNAGPISINNPLHASHFALFPSLWSGTRASTEPGAQFSRSHSALEEYGKNDEIENVWSLLRCVDCAHLSPTKVVGTVTVNPSNVLSKMMFIMSWIIDSRTIARKVRNISQSSSQVIKDCDAKRECPNCHFIIDNTDVSPEWPGLPAGVKFDPTDEEIMEHLAAKCTVGNLKPHALIDEFIPTLETDQGICYTHPENLPGVSKDGNDVHFFHKTSNAYSTGQRKRRKIESEHNSSLEHFRWHKTGKTKAVIENGVHKGWKKIFSLYRSSKGGSKPQKSNWVIHQYHLGTEEDEKEGEYVLSKISYQQPKQCIKSSDNMLIEDFDAMLHQTSPRTPKSNPPIPPRSGKSLVSNAVADNSLPQSFAKEEESTPEASRVSYPNISSENDTGYHDWLAGESQDIDDVGLHYLEDNLLCNEVLDSSAFISNNQVNQMPFPLSGSNAYHEIANDNVPCGIADLVNLELDTPPDFHLATLIIACRTCSLVLKRAFSTGSIGYELNVEANSNENDMLQSDFSAPESSLNSPSFIVKLFAIIWLSFVWGMPCMSPVGSRLNFKIRMTRNNLRTYLSVVSHGQVIESRTTATDPVMKLPEIAKPLPVGGGNLGMEMSD 988
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4536100 4550776 - CrPI670011_01g005250.1 Cre01g0525 488070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g0525 988 FunFam NAC domain-containing protein 8 534 690 - -
Cre01g0525 988 Gene3D Phosphorylase Kinase; domain 1 13 104 - -
Cre01g0525 988 ProSiteProfiles NAC domain profile. 525 686 IPR003441 GO:0003677(InterPro)|GO:0006355(InterPro)
Cre01g0525 988 Gene3D NAC domain 534 691 IPR036093 GO:0003677(InterPro)|GO:0006355(InterPro)
Cre01g0525 988 Pfam No apical meristem (NAM) protein 526 667 IPR003441 GO:0003677(InterPro)|GO:0006355(InterPro)
Cre01g0525 988 Gene3D Transferase(Phosphotransferase) domain 1 106 296 - -
Cre01g0525 988 Pfam Protein tyrosine and serine/threonine kinase 30 285 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre01g0525 988 SUPERFAMILY Protein kinase-like (PK-like) 17 319 IPR011009 -
Cre01g0525 988 PRINTS Tyrosine kinase catalytic domain signature 139 157 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre01g0525 988 PRINTS Tyrosine kinase catalytic domain signature 256 278 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre01g0525 988 PRINTS Tyrosine kinase catalytic domain signature 213 235 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre01g0525 988 PRINTS Tyrosine kinase catalytic domain signature 101 114 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre01g0525 988 FunFam Kinase suppressor of Ras 1 14 104 - -
Cre01g0525 988 MobiDBLite consensus disorder prediction 741 761 - -
Cre01g0525 988 MobiDBLite consensus disorder prediction 709 729 - -
Cre01g0525 988 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre01g0525 988 ProSiteProfiles Protein kinase domain profile. 25 297 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre01g0525 988 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 474 853 IPR044799 GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(PANTHER)
Cre01g0525 988 SMART serkin_6 25 292 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre01g0525 988 SUPERFAMILY NAC domain 511 686 IPR036093 GO:0003677(InterPro)|GO:0006355(InterPro)
Cre01g0525 988 CDD STKc_MAP3K-like 31 285 - -
Cre01g0525 988 ProSitePatterns Protein kinases ATP-binding region signature. 31 56 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0525 Cre-Chr1:4536100 Cre10g2370 Cre-Chr10:37805218 1.80E-112 dispersed
Cre01g0525 Cre-Chr1:4536100 Cre10g1526 Cre-Chr10:29191485 3.00E-147 wgd
Cre01g0525 Cre-Chr1:4536100 Cre06g2601 Cre-Chr6:33704064 1.80E-144 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52984 PF07714 PK_Tyr_Ser-Thr 1.40E-57 CL0016 Cre TF
63803 PF07714 PK_Tyr_Ser-Thr 1.40E-57 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g0525 - - - 0.0