Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre01g0532 | ATGGCTTCTTCAAGCTTCTCAAACTCACCATGTGCAGCATGCAAATTCCTAAGAAGAAAATGCTTAGCCGATTGCATATTTGCGCCCTACTTTCCTCCTGAAGAGCCAACCAAATTTGCCAATGTTCACAAGATCTTTGGAGCCAGCAATGTGAGCAAGCTTCTCAATGAGGTCCAGCCCCATCAGCGCGAGGACGCCGTAAATTCTCTAGCCTACGAGGCCGAGGCTCGTATGAAAGACCCCGTCTACGGTTGTGTCGGGGCCATCTCCGTTCTACAAAGACAAGTCATTCGCTTGCAGAAAGAGCTCGATGCTACAAATGCTGATTTAGTGCGATATGCAAGCGGGGGCGCTCGCCCGCCCTCGCAATTTGGAAGAAGGGCAGCAACTGCCTCGATCACTCGCCATCATTCTGACCTGTCTTTTCTTTCTCCCTTGAGTAGTAATGATCATGATGATCCTTATTGCCATGATAAAGAGGAAGACAATTGA | 492 | 48.78 | MASSSFSNSPCAACKFLRRKCLADCIFAPYFPPEEPTKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRQVIRLQKELDATNADLVRYASGGARPPSQFGRRAATASITRHHSDLSFLSPLSSNDHDDPYCHDKEEDN | 163 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 4618826 | 4619317 | + | CrPI670011_01g005320.1 | Cre01g0532 | 488077 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre01g0532 | 163 | Coils | Coil | 89 | 109 | - | - | |
Cre01g0532 | 163 | ProSiteProfiles | LOB domain profile. | 9 | 110 | IPR004883 | - | |
Cre01g0532 | 163 | Pfam | Lateral organ boundaries (LOB) domain | 10 | 107 | IPR004883 | - | |
Cre01g0532 | 163 | MobiDBLite | consensus disorder prediction | 140 | 163 | - | - | |
Cre01g0532 | 163 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 8 | 116 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre01g0532 | Cre-Chr1:4618826 | Cre11g1551 | Cre-Chr11:24820525 | 2.30E-44 | dispersed | |
Cre01g0532 | Cre-Chr1:4618826 | Cre01g1243 | Cre-Chr1:25632238 | 6.00E-45 | wgd | |
Cre01g0532 | Cre-Chr1:4618826 | Cre10g1536 | Cre-Chr10:29334984 | 7.30E-59 | wgd | |
Cre01g0532 | Cre-Chr1:4618826 | Cre06g2588 | Cre-Chr6:33590516 | 3.90E-52 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
52985 | PF03195 | LOB | 9.30E-42 | No_clan | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre01g0532 | - | - | - | 0.0 |