Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g0532 ATGGCTTCTTCAAGCTTCTCAAACTCACCATGTGCAGCATGCAAATTCCTAAGAAGAAAATGCTTAGCCGATTGCATATTTGCGCCCTACTTTCCTCCTGAAGAGCCAACCAAATTTGCCAATGTTCACAAGATCTTTGGAGCCAGCAATGTGAGCAAGCTTCTCAATGAGGTCCAGCCCCATCAGCGCGAGGACGCCGTAAATTCTCTAGCCTACGAGGCCGAGGCTCGTATGAAAGACCCCGTCTACGGTTGTGTCGGGGCCATCTCCGTTCTACAAAGACAAGTCATTCGCTTGCAGAAAGAGCTCGATGCTACAAATGCTGATTTAGTGCGATATGCAAGCGGGGGCGCTCGCCCGCCCTCGCAATTTGGAAGAAGGGCAGCAACTGCCTCGATCACTCGCCATCATTCTGACCTGTCTTTTCTTTCTCCCTTGAGTAGTAATGATCATGATGATCCTTATTGCCATGATAAAGAGGAAGACAATTGA 492 48.78 MASSSFSNSPCAACKFLRRKCLADCIFAPYFPPEEPTKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRQVIRLQKELDATNADLVRYASGGARPPSQFGRRAATASITRHHSDLSFLSPLSSNDHDDPYCHDKEEDN 163
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4618826 4619317 + CrPI670011_01g005320.1 Cre01g0532 488077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g0532 163 Coils Coil 89 109 - -
Cre01g0532 163 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Cre01g0532 163 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
Cre01g0532 163 MobiDBLite consensus disorder prediction 140 163 - -
Cre01g0532 163 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 116 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0532 Cre-Chr1:4618826 Cre11g1551 Cre-Chr11:24820525 2.30E-44 dispersed
Cre01g0532 Cre-Chr1:4618826 Cre01g1243 Cre-Chr1:25632238 6.00E-45 wgd
Cre01g0532 Cre-Chr1:4618826 Cre10g1536 Cre-Chr10:29334984 7.30E-59 wgd
Cre01g0532 Cre-Chr1:4618826 Cre06g2588 Cre-Chr6:33590516 3.90E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52985 PF03195 LOB 9.30E-42 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g0532 - - - 0.0