Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g0543 ATGCAGAATAACGCTGTATTGGCTTTGGCTATGTCTTTTTCCCCTAATTCTATTGCTACGGCTACTGCTATTCCATGCCCAAGCCGAAGCCCTAATTTCCCTCACTTTTCCCACATTCTTCAATTTCGTTCTCAATGTTCCATCTCATGGCGTTCTTCTTCATCCATCTCTCTTTTTTCTTCTCGATTTACTCCGAGGTTTCAGAAATTTGCCGTAATGGCTGCTTCTGTGCCGGAGAGTGCCGGCGAGGCTGTGGAATCCGTTGATTTCGTTCATAATCTCCGGCTTGGTGCAATGTTTGGGGTTTGGTACCTTTTGAATATCTACTACAATATTTTCAACAAACAGGTTCTGAAAGCCTTTCCCTTTCCAACTACGGTCACAGCTTTCCAGTTCGGCTGTGGTACGCTCATAGTAAACTTAATGTGGGCTCTTCATTTTCACCATAGACCCAAGATCAATCGATCCCAGTTTGCTGCCATTCTTCCGCTGGCTGTAGCGCACACACTGGGAAACATATTAACCAATGTGAGTCTTGGGAGAGTTGCGGTTTCATTCACTCACACCATCAAAGCAATGGAGCCATTTTTCACTGTCCTTCTCTCTGCTTTGTTTTTGGCTGAGAGGCCCACATTTTGGGTTGTTTTTTCTCTGGTACCCGTTGTAGGAGGAGTGGCACTTGCTTCTTTCACTGAAGCCTCATTTAATTGGATTGGCTTCAGCAGTGCCATGGCTTCCAATCTTACCAATCAATCACGTAATATCTTCAGCAAAAAGTTCATGGTCCACAAAGAGGCATTGGACAATATCAATCTCTTCTCTGTACTTACTATCATTTCGTTTATCCTGTTGGTTCCCTCGGCCCTTCTCCTTGAAGGCAGTAAACTTAGTCCTTCATACCTGCAATTAGCGGCAAATCAAGGGTTGAATATTAGGGAGCTATGCATTAGGTTGCTTCTATCTGGCATCTGTTTCCATAGTTATCAGCAGGTTTCTTATTCAATACTACAGGAAATTTCACCAGTGAGCCATGCAGTAGGAAATTCTTTGAAGCGTGTGGTGGTTATAGTGTCCTCCGTTATTTTCTTCCAAACAGCAGTTTCACCTCTAAACGCCCTAGGAACTGGCATAGCTCTTGTGGGAGTTTTCTTGTATTCAAGGGCAAAGCGTATGAAGCCAAAGCTTAAGTCTTTGTAA 1197 43.69 MQNNAVLALAMSFSPNSIATATAIPCPSRSPNFPHFSHILQFRSQCSISWRSSSSISLFSSRFTPRFQKFAVMAASVPESAGEAVESVDFVHNLRLGAMFGVWYLLNIYYNIFNKQVLKAFPFPTTVTAFQFGCGTLIVNLMWALHFHHRPKINRSQFAAILPLAVAHTLGNILTNVSLGRVAVSFTHTIKAMEPFFTVLLSALFLAERPTFWVVFSLVPVVGGVALASFTEASFNWIGFSSAMASNLTNQSRNIFSKKFMVHKEALDNINLFSVLTIISFILLVPSALLLEGSKLSPSYLQLAANQGLNIRELCIRLLLSGICFHSYQQVSYSILQEISPVSHAVGNSLKRVVVIVSSVIFFQTAVSPLNALGTGIALVGVFLYSRAKRMKPKLKSL 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4717185 4724378 + CrPI670011_01g005430.1 Cre01g0543 488088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g0543 398 Pfam Triose-phosphate Transporter family 94 386 IPR004853 -
Cre01g0543 398 SUPERFAMILY Multidrug resistance efflux transporter EmrE 141 231 - -
Cre01g0543 398 PANTHER SOLUTE CARRIER FAMILY 35 89 389 IPR050186 GO:0005794(PANTHER)|GO:0015297(PANTHER)
Cre01g0543 398 SUPERFAMILY Multidrug resistance efflux transporter EmrE 311 391 - -
Cre01g0543 398 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 94 395 IPR004696 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0543 Cre-Chr1:4717185 Cre05g0332 Cre-Chr5:3069926 4.10E-63 dispersed
Cre01g0543 Cre-Chr1:4717185 Cre01g1262 Cre-Chr1:25823300 2.20E-117 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g0543 K15283 - csv:101217436 672.93