Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g0552 ATGATAGTATGCAAGCTGGCAGGGGAGAAAGTTTGGGAGACTGTTGGGTCTGGAACATCCTTTCAACCTCATATAATTCGTCATAGTCCCCAGTCAAAACCTTATTTTGTGGTCAACCGGCAAGCTTCCAAATCCATTGCTTTGAATTTGGGAGGAGTTGGTGCTAATCAATTACTAACACTTGATGCACGCCTTGAGGACAAGAAAATTTTTCAGAGGTCTTGGAAGCTTTGTTGGTTGTTTGCTGGTGGATGGAAACTTATGGAGAATCCTTCAGAAAAAAAGTATCCAGTGAATGCCAAGGATTATAACTTACATGAAGAAGTTGGTGAAGGTGTCAGTGCCACTGTGTACAAGGCACTGTGCATTCCGCTAAATGAGATTGTCGCTATAAAGGTTCTTGATTTGGAGAAGTGCAACAATGACCTAGATGGTATTCGGCGAGAGGTTCAAACAATGACTTTGATTGATCATCCAAATTTGTTAAGAGCACATTGTTCCTTCACTGCTGGTCACCACCTCTGGGTTGTGATGCCATATATGTCTGGTGGATCTTGCCTTCATATTATGAAATCTGCTTATTCGGAAGGTTTTGATGAGCCTGTCATAGCCACCCTATTGCGGGAGGTTCTGAAAGCTCTTGTTTATCTTCATGCTCATGGCCACATCCATAGAGATGTGAAGGCTGGGAATATTTTGCTTGATTCTAATGGTACAGTCAAATTAGCTGATTTTGGAGTCTCAGCTTGCATGTTTGATACTGGAGATAGGCAACGCTCAAGAAACACATTTGTCGGAACTCCTTGCTGGATGGCACCTGAAGTTATGCAGCAATTACATGGATATGACTTCAAGGCAGACATTTGGTCGTTTGGAATAACAGCACTTGAACTGGCTCATGGGCATGCTCCATTTTCTAAATACCCACCAATGAAAGTTTTGCTTATGACATTACAAAATGCTCCCCCTGGTCTTGACTATGAAAGAGATAAGAGATTTTCTAAGTCATTCAAAGAAATGGTCGCTACATGCTTAGTGAAGGATCCAAAGAAACGGCCAAGTTCTGAGAAGCTGCTAAAGCACCCTTTTTTTAAACATGCTCGTTCAGTTGATTATCTTGCTCGAACAATCCTGGATGGCCTTGATCCGTTAGGGGAACGTTTTAAGAAGCTAAAGGCCAAAGAGGCTGATCTTCTGGGACAAAACAAGGCTTTGTATGGGGACAAGGAGCATTTATCACAGCAAGAGTATATTCGAGGAATTAGTGCCTGGAACTTCAATCTTGAGGATTTAAAGAATCAGGCTGCCCTTATTCAAGATGACGATGTGTCAAACATAGAAGATCTAGATGTACATACTACACAGCAAAGAAACAAGAATAATGAGTTTACCTTTCCAGTAGAGGGTTCATCCCTTGAAAGACTGAATCACCCTACTGCTGCAGCTAGTCAGGAGGATGGTTTTAACGATCTTCATGATTTGGAGAGTTCCCTTGCTTCTTTTCCTATAAAACCTCTTGAAGCACTCAAAGATTGTTTTGATATCTATGAAGATATAAGCACGGACAGTGTAAGGCCAGTGGATAGAGAAAATGGAAGAACGGAGGGTGAGAGTTCAGGGCAAAGTGGTTCCTTACCACGTCATTACATGTCAGAGAACAAGAGGTCTTTTAGCGGTTCACTAATTTCTGACAATGCTGTTTCTCCTAAAAAGACTATTGCAGATGGTGATAGGGACTATTTGCAGTCAAAACCTCCATCTGAGCGTAATTACAGTGGTCCACTATTATATCGCCAGAAAAGGGATACAAATAATGTTTCATCTGTTGAGGATGCATCAGATGGAACAGTTGTTCAACGCAAGGGGCGGTTCAAAGTTACTTCAGCGGAGCTTAGTCCAAAGGGTCCTATGACGGGCTCATTTAGCCCTGTCTGTGGAGGGACGATAAGTCCAACATCCCTGAACCTCACACCTGCTCTACTCCTCCCATCAATGCAATGCATTTTGCAGCAGAACATCCTTCAACGGGAAGAAATTGTTAAATTGATCAAGTGTTTGGAACAAATGACTGGCAAGAATCCAGATGTTTCAGAGGCGGTCACCAGTGACCTTCTGCAGGTACCACCAACTTCCTTGAGGGAAAGAGAGTTACAATCTCAGGTCGTTCATCTGCAGCAGAGAATTGATCATCTTGTTGAGGAATTAGAGAAGCAAAAGTTGAAAAATGCGGAGTTTGAAAAACACATGATTTCTATGGCAAATAAAGAGAAAACATAA 2277 42.07 MIVCKLAGEKVWETVGSGTSFQPHIIRHSPQSKPYFVVNRQASKSIALNLGGVGANQLLTLDARLEDKKIFQRSWKLCWLFAGGWKLMENPSEKKYPVNAKDYNLHEEVGEGVSATVYKALCIPLNEIVAIKVLDLEKCNNDLDGIRREVQTMTLIDHPNLLRAHCSFTAGHHLWVVMPYMSGGSCLHIMKSAYSEGFDEPVIATLLREVLKALVYLHAHGHIHRDVKAGNILLDSNGTVKLADFGVSACMFDTGDRQRSRNTFVGTPCWMAPEVMQQLHGYDFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDKRFSKSFKEMVATCLVKDPKKRPSSEKLLKHPFFKHARSVDYLARTILDGLDPLGERFKKLKAKEADLLGQNKALYGDKEHLSQQEYIRGISAWNFNLEDLKNQAALIQDDDVSNIEDLDVHTTQQRNKNNEFTFPVEGSSLERLNHPTAAASQEDGFNDLHDLESSLASFPIKPLEALKDCFDIYEDISTDSVRPVDRENGRTEGESSGQSGSLPRHYMSENKRSFSGSLISDNAVSPKKTIADGDRDYLQSKPPSERNYSGPLLYRQKRDTNNVSSVEDASDGTVVQRKGRFKVTSAELSPKGPMTGSFSPVCGGTISPTSLNLTPALLLPSMQCILQQNILQREEIVKLIKCLEQMTGKNPDVSEAVTSDLLQVPPTSLRERELQSQVVHLQQRIDHLVEELEKQKLKNAEFEKHMISMANKEKT 758
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4811021 4821551 - CrPI670011_01g005520.1 Cre01g0552 488097

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g0552 758 Pfam Protein kinase domain 103 364 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre01g0552 758 FunFam serine/threonine-protein kinase BLUS1 isoform X1 184 417 - -
Cre01g0552 758 SMART serkin_6 103 364 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre01g0552 758 ProSiteProfiles Protein kinase domain profile. 103 364 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre01g0552 758 Gene3D Phosphorylase Kinase; domain 1 92 179 - -
Cre01g0552 758 ProSitePatterns Protein kinases ATP-binding region signature. 109 132 IPR017441 GO:0005524(InterPro)
Cre01g0552 758 CDD STKc_OSR1_SPAK 101 364 - -
Cre01g0552 758 MobiDBLite consensus disorder prediction 568 594 - -
Cre01g0552 758 Coils Coil 714 748 - -
Cre01g0552 758 SUPERFAMILY Protein kinase-like (PK-like) 100 365 IPR011009 -
Cre01g0552 758 MobiDBLite consensus disorder prediction 536 551 - -
Cre01g0552 758 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 93 744 IPR047173 GO:0043539(InterPro)
Cre01g0552 758 MobiDBLite consensus disorder prediction 524 551 - -
Cre01g0552 758 FunFam Serine/threonine-protein kinase BLUS1 92 180 - -
Cre01g0552 758 Gene3D Transferase(Phosphotransferase) domain 1 184 398 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g0552 K08835 - - csv:101205102 1324.3
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0552 Cre-Chr1:4811021 Cre10g1435 Cre-Chr10:28053768 2.60E-159 dispersed
Cre10g1412 Cre-Chr10:27842247 Cre01g0552 Cre-Chr1:4811021 9.00E-13 dispersed
Cre01g0552 Cre-Chr1:4811021 Cre05g0552 Cre-Chr5:4904613 5.60E-93 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre11g2191 . 104 789 MAP Kinase Kinase Kinase Kinase AT1G53165 64.0 1.5e-225 779.6
Cre11g1591 . 254 514 MAP Kinase Kinase Kinase Kinase AT1G53165 53.1 3.6e-67 253.4
Cre07g1070 . 326 578 MAP Kinase Kinase Kinase Kinase AT1G53165 53.5 2.6e-65 247.3
Cre11g2191 . 104 788 MAP Kinase Kinase Kinase Kinase AT3G15220 65.9 4.0e-231 798.1
Cre11g1591 . 254 514 MAP Kinase Kinase Kinase Kinase AT3G15220 51.5 1.6e-67 254.6
Cre07g1070 . 326 578 MAP Kinase Kinase Kinase Kinase AT3G15220 52.0 1.5e-65 248.1
Cre11g1591 . 4 597 MAP Kinase Kinase Kinase Kinase AT1G69220 59.0 2.1e-170 596.7
Cre07g1070 . 60 578 MAP Kinase Kinase Kinase Kinase AT1G69220 60.5 4.3e-152 535.8
Cre07g1069 . 46 364 MAP Kinase Kinase Kinase Kinase AT1G69220 53.2 2.3e-81 300.8
Cre01g0552 . 88 755 MAP Kinase Kinase Kinase Kinase AT5G14720 66.2 6.2e-253 870.5
Cre05g0552 . 32 385 MAP Kinase Kinase Kinase Kinase AT5G14720 51.3 1.6e-96 350.9
Cre10g0347 . 7 721 MAP Kinase Kinase Kinase Kinase AT4G24100 65.0 2.9e-248 855.1
Cre10g0347 . 11 722 MAP Kinase Kinase Kinase Kinase AT4G10730 64.9 4.0e-247 851.3
Cre10g1435 . 4 478 MAP Kinase Kinase Kinase Kinase AT1G70430 51.9 2.8e-132 469.5
Cre10g0347 . 5 369 MAP Kinase Kinase Kinase Kinase AT1G70430 56.8 5.2e-118 422.2
Cre10g1435 . 1 676 MAP Kinase Kinase Kinase Kinase AT1G79640 59.6 7.7e-216 747.3
Cre01g0552 . 88 415 MAP Kinase Kinase Kinase Kinase AT1G23700 59.2 2.9e-103 372.9
Cre10g1435 . 8 324 MAP Kinase Kinase Kinase Kinase AT1G23700 53.1 2.2e-87 320.1
Cre10g0347 . 15 306 MAP Kinase Kinase Kinase Kinase AT1G23700 50.8 2.6e-75 280.0
Cre05g0552 . 32 499 MAP Kinase Kinase Kinase Kinase AT4G14480 60.2 2.6e-144 509.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003111 2 8 2 1 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 3 2 2 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63804 PF00069 Pkinase 3.60E-60 CL0016 Cre PK