Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g0558 ATGGATCATTCACTCGAGACGTCGAGGCACAAGTGTGCAGCTTGTTTCAGACAATTCAACAAGATAGAGCATTTGGTAGATCATATGAGGACTTCTTTTCACTCACATCATGAACCCACTTGTGCCATTTGCAGGAAACATTGTCGATCTCTTGATTCTCTTAGAGAACATCTCATTGGGCCACTGCCAAAACAAGAATGCAAAAACATATTTGCTACACGAGGATGCAAGTTTTGCTTGGCCATCCTTGACAGTTCTTACTCGCAAAGGCTCCACCAAGAAAGATGCCAATTCTCGGCTGTAAATTCTGGACTTCTTGCTCGTTTCGCCAACTTGGGAATTCGTGACGGTTCGACTGTCATCGATAGTGGAAGAACTCGCGGCTCGGGCGCCGTGGCGTTAGCTTGCAAATATGTAGGTGGGGGCAGCGATGGGTCGCTGGACATATGCGCCAAGGTTTGCCTTATTGATGAGAGCGAAAATGTCATCTTCTATAGCTATGTCAAGCCCATAATTCCTGTCACAAATTATAGGTATGAAACGGTGGGAATTCGTCCAGAACACATTCGAGATGCAATGCCACTAAAGCAAGTTCAAAAGAAAATGCAAGATATCCTCTACAATGGAGGTGAGAAGGCTAGGATTCTTGTGGGTCACTGTGTTGAAGATGATCTCAAACGTCTACAAATCGGATACCCATCCGTCATGATAAGGGACACAGCAAATTATCCGCCATTGATGAAGACGAGCAAGCTTTGCAATTCACTCAAATATCTAGCTCAAGTGTATCTAGGATTTGAGCTACAAAATGGGATACAAGATCCTTATGAAGAATGTATTGTGGCCATGAGATTGTACAAGAGAATGAGATCACAAGTTCATAGGATAGAGAAACATCCAATGGCTTCTGACCCACAAAACAAAAATAACTTTGCTAATTGGAGGGAAAATGAGCTTCAAAGGATGAGTCCAGAACAAATGTTGGAGATTTCTAGGTCTGATTATTATTGTTGGTGCATGGACTCGAGGATTTGA 1035 43.0 MDHSLETSRHKCAACFRQFNKIEHLVDHMRTSFHSHHEPTCAICRKHCRSLDSLREHLIGPLPKQECKNIFATRGCKFCLAILDSSYSQRLHQERCQFSAVNSGLLARFANLGIRDGSTVIDSGRTRGSGAVALACKYVGGGSDGSLDICAKVCLIDESENVIFYSYVKPIIPVTNYRYETVGIRPEHIRDAMPLKQVQKKMQDILYNGGEKARILVGHCVEDDLKRLQIGYPSVMIRDTANYPPLMKTSKLCNSLKYLAQVYLGFELQNGIQDPYEECIVAMRLYKRMRSQVHRIEKHPMASDPQNKNNFANWRENELQRMSPEQMLEISRSDYYCWCMDSRI 344
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 4899109 4902918 + CrPI670011_01g005580.1 Cre01g0558 488103
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cre01g0558 344 ProSitePatterns Zinc finger C2H2 type domain signature. 12 34 IPR013087 -
Cre01g0558 344 ProSiteProfiles Zinc finger C2H2 type domain profile. 10 39 IPR013087 -
Cre01g0558 344 Gene3D - 128 309 IPR036397 GO:0003676(InterPro)
Cre01g0558 344 SUPERFAMILY Ribonuclease H-like 145 292 IPR012337 -
Cre01g0558 344 CDD REX4_like 132 287 IPR037431 GO:0006364(InterPro)|GO:0008408(InterPro)
Cre01g0558 344 SMART exoiiiendus 130 295 IPR013520 -
Cre01g0558 344 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 6 342 IPR047021 GO:0004527(InterPro)|GO:0004527(PANTHER)|GO:0005634(PANTHER)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0558 Cre-Chr1:4899109 Cre04g0424 Cre-Chr4:14826459 2.10E-79 dispersed
Cre01g0558 Cre-Chr1:4899109 Cre01g0559 Cre-Chr1:4921792 2.40E-67 tandem
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g0558 - - - 0.0