Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g0567 ATGCAATATTCGAAAAACTCCAAGAATACAAGTGGATGGCGCCGAATCATAAGGGGTTCATACAGCATCGTTGAATCCATTCCGCCGGGGTCTCTGATTTCCCGGTCGCCGGAGTTTCTGTTTCCGATCAACCAGGTTTTCGAGACTGACGAAGAGCTGGGTAATAACAAAGCTGGTGGTGTGATGGGGTTTTGTATTTCTCCATTGGGAACACCGGCTAGGTTACTTTGGAGCACCAGTCACGCCAACATGTTGTTTTTCGGAAGTGGTGATTCCATTCTTCGAGGACCAAGTTTCACGATGGGGATGGAGGAAACTTCAAAGAGGCGACCCTTTTTCAGCTCTCCGGATGACCTGTTTGACGATGACTACTACGATGATCAGCCACCTGAGAAGAAGCGCCGGCTAACTCAAGAGCAGGTGCATCTGCTGGAGATTAGCTTTGAGTCAGAAAACAAACTGGAGCCAGAGCGCAAGACTGAGCTAGCAAAGAAGCTGGGTCTGCAGCCAAGGCAAGTGGCTGTGTGGTTTCAAAACCGCCGAGCTAGATGGAAGACAAAGCAGCTTGAAAGGGACTATGATCTTCTCAAATCTTCATATGATTCCTTTCGTTCAAGCTACGACTTTATTGCTAAGGAGAATGAAAGGCTCAAAGCCGAGGTAGCTTCTTTAACTGAGAAACTTCAAGCTAAAGAAGTGGTTGAATCATCGTTTCAAGCTAAGAATCCCGAGCCATTTCTGGAGGATCAACTCCTTGTTCCTGTTGTGCAACATGGCATTAAGATTGAAGACCACCATAGTTGCAGGAGCAACGGAAGCGCTGTGCTGGACGAGGACGGTCCTCAACTCTTAGACAGTGGGGATTCGTACCTCTTGAGCAATGACTATGATGGTTGTGTTTTGCCAGTTTTTGGAGTGAACTCGGAGGAGGAAGATGGGAGTGACGACGGTCAGGGTTACTTCTCGGATGTTTATACAACAGCCGATCAACAGACTCACGAGGGAGAGCCTTTGACCTGGTGGGACTGGACATCGTAA 1038 48.07 MQYSKNSKNTSGWRRIIRGSYSIVESIPPGSLISRSPEFLFPINQVFETDEELGNNKAGGVMGFCISPLGTPARLLWSTSHANMLFFGSGDSILRGPSFTMGMEETSKRRPFFSSPDDLFDDDYYDDQPPEKKRRLTQEQVHLLEISFESENKLEPERKTELAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKSSYDSFRSSYDFIAKENERLKAEVASLTEKLQAKEVVESSFQAKNPEPFLEDQLLVPVVQHGIKIEDHHSCRSNGSAVLDEDGPQLLDSGDSYLLSNDYDGCVLPVFGVNSEEEDGSDDGQGYFSDVYTTADQQTHEGEPLTWWDWTS 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4975021 4977666 + CrPI670011_01g005670.1 Cre01g0567 488112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g0567 345 CDD homeodomain 132 188 IPR001356 GO:0003677(InterPro)
Cre01g0567 345 Gene3D - 126 193 - -
Cre01g0567 345 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 105 265 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Cre01g0567 345 SUPERFAMILY Homeodomain-like 116 189 IPR009057 -
Cre01g0567 345 FunFam Homeobox-leucine zipper protein HAT5 125 189 - -
Cre01g0567 345 SMART HOX_1 130 191 IPR001356 GO:0003677(InterPro)
Cre01g0567 345 ProSitePatterns 'Homeobox' domain signature. 162 185 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cre01g0567 345 Pfam Homeodomain 132 185 IPR001356 GO:0003677(InterPro)
Cre01g0567 345 PRINTS Lambda-repressor HTH signature 158 167 IPR000047 GO:0003677(InterPro)
Cre01g0567 345 PRINTS Lambda-repressor HTH signature 167 183 IPR000047 GO:0003677(InterPro)
Cre01g0567 345 ProSiteProfiles 'Homeobox' domain profile. 127 187 IPR001356 GO:0003677(InterPro)
Cre01g0567 345 Coils Coil 207 234 - -
Cre01g0567 345 Pfam Homeobox associated leucine zipper 187 229 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0567 Cre-Chr1:4975021 Cre01g1323 Cre-Chr1:26449073 1.80E-27 dispersed
Cre01g0567 Cre-Chr1:4975021 Cre10g1576 Cre-Chr10:29786220 2.00E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52988 PF00046 Homeodomain 4.90E-17 CL0123 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g0567 K09338 - csv:101210106 483.026