Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g0568 ATGGATACAAGCTTGTTCAGGGGTCATCCTGAAAAGAGAGATTCATGGAGGACAATCTTCACTTTAGCTTATCAGAGTTTGGGGGTTGTTTATGGGGATTTAAGCACTTCTCCTTTGTATGTGTATAAAAGCACTTTTGCAGAGAACCTTCAGCACTCTGAGACTAATGAGGAGGTTTATGGGGTTCTTTGCTTTGTGTTTTGGACTTTGACACTTATCCCTTTACTTAAATATGTGTTTATAGTTCTTAGAGCTGATGACAATGGCGAAGGGGGAACTTTTGCTCTGTATTCATTGCTCTGTCGCCATGCTCGGTTGAGCTCTCTCCCAAATCACCAACTAGCGGATGAGGAGCTTTCTGCATATACAATTGACAGCCCACAAACTGAAAACACTACTAATTTTAGTTTTAGTTCTTGTCTGAAATCAACTTTGGAGAAATGTAAAGTTCTGCAAAAAATGTTGCTTGTTCTTGCTTTGATTGGGACTTGCATGGTTATTGGAGATGGTGTTCTCACACCAGCAATCTCAGTTTTTTCAGCTGTTTCTGGGCTTGAGTTATCCATGGCTAAGGAACATCACCAGTATATCGAAGTCCCTCTAGCGTGTGGCATATTGGTATTCTTATTCGCATTGCAACACTATGGAACGCATCAGGTTGGGTTCCTGTTTGCTCCAGTTGTAATTGTATGGCTTCTATGCATTAGTGCCATTGGTTTGTACAATATCTTCTATTGGAATCCCCTGGTTTACAAAGCACTCTCGCCATACTACATGTATAAGTTCTTAAAAAAAACCAAAAAGCAAGGTTGGATGGCACTCGGCGGAATCCTCTTGTGTATAACAGGCTCAGAAGCTATGTTTGCTGATCTTGGGCACTTCTCACAGTTTTCTATCAAGCTTGCTTTCACTTTTGCGGTTTATCCATCCTTAGTTCTCGCATATATGGGACAAGCTGCTTATCTTTCTAAGCATCACAATCTCGATAATGAATATCGGATCGGATTCTATGTTTCTGTTCCCGAGAAGGTAAGATGGCCAGTTCTTGCAATAGCAATACTTGCAGCAGTTGTTGGTAGTCAAGCGATCATCACCGGCACATTTTCGATCATCAAACAATGTTCTGCTTTGGGTTGTTTTCCAAGGGTAAAGATCATTCATACATCTTCGAAAATACACGGCCAGATTTACATTCCCTTGATCAACTGGATACTAATGATATTGTGTTTGGCTGTTACCATTGGGTTTAGAGACACAAAACGACTAGGCAATGCAGCAGGGTTGGCAGTTATTACTGTTATGCTCGTCTCGACATGTCTAATGTCACTCGTCATTGTATTATGTTGGCGTAAAAGTGTGTTGCTGGCCATAGCCTTCATACTCTTCTTTGGCTCCGTAGAAGCTCTCTACTTCTCTGCTTCTCTTATTAAGTTCTTTGAAGGGGCTTGGGTTCCTATTGTTCTTTCATTGACCTTCCTTGTGGTTATGTATGTTTGGCACTATGGCACAGTGAAGAAATATGAAGCTGATGTTGAAAACAAAGTCCCTATAAATTGGCTCCTCAGTATAGGACCCAAAATTGGGATCGTTCGAGTCCGGGGGATCGGCCTTGTACATACCGAACTCGTTTCGGGGATCCCTGCCATTTTCTCTCATTTTGTCACCAACCTTCCAGCCTTTCATCAAATTCTAGTCTTCCTCTGCATCAAATCTGTCACAGTGCCTCATGTGAGGCCTGAGGAAAGGTTTTTAGTTGGACGAGTTGGGCCAAAGGAGTATCGACTTTACCGTTGCATCGCACGGTATGGCTATCGTGACATGCACAAGGACGACTTGGAGTTCGAGAGAGATCTTGCTTGCAGCATTGCAGAATTGATACGGTCCGAGAGAACAGAATGCAACAATTTTAGACACGAAGACTTGGAGGACAATGAAAGAATGACAGTGATTGGGACTTCATCAACCCAACTAGAGGGTATACAAATGTGTGAAAACGAAACATATGCTTCGCCAATCATGGGAACTTCAGAGATAATAAAGTCGGAGCAGTTGAGAAAAAGAGTTAGATTGGTTCTCCCCGAGAGTCCGAAAATGAACATGGATACGAGGGGAGAGTTGCAAGAGTTGATGGAGGCAAGGGAGGCAGGAATAGCATTTATAATGGGGCATTCATATGTGAAGGCAAAGAAAGGATCAGGTTGGATGAAGAAGCTTGTGATTAATTATGGATATGATTTCTTGAGGAAAAATTCAAGAGGGCCATCTTATGCTTTCAGCATTCCTTATGCTTCTACTCTTGAGGGTACCACATGGTTGATATGTAGAGGTGAAAAGCAGTCAACTTTATTTTTGGGTCTCTACTCAAGTGCTTCCTCAAAATGTGTAGCTTCAATCCCTTAA 2400 42.04 MDTSLFRGHPEKRDSWRTIFTLAYQSLGVVYGDLSTSPLYVYKSTFAENLQHSETNEEVYGVLCFVFWTLTLIPLLKYVFIVLRADDNGEGGTFALYSLLCRHARLSSLPNHQLADEELSAYTIDSPQTENTTNFSFSSCLKSTLEKCKVLQKMLLVLALIGTCMVIGDGVLTPAISVFSAVSGLELSMAKEHHQYIEVPLACGILVFLFALQHYGTHQVGFLFAPVVIVWLLCISAIGLYNIFYWNPLVYKALSPYYMYKFLKKTKKQGWMALGGILLCITGSEAMFADLGHFSQFSIKLAFTFAVYPSLVLAYMGQAAYLSKHHNLDNEYRIGFYVSVPEKVRWPVLAIAILAAVVGSQAIITGTFSIIKQCSALGCFPRVKIIHTSSKIHGQIYIPLINWILMILCLAVTIGFRDTKRLGNAAGLAVITVMLVSTCLMSLVIVLCWRKSVLLAIAFILFFGSVEALYFSASLIKFFEGAWVPIVLSLTFLVVMYVWHYGTVKKYEADVENKVPINWLLSIGPKIGIVRVRGIGLVHTELVSGIPAIFSHFVTNLPAFHQILVFLCIKSVTVPHVRPEERFLVGRVGPKEYRLYRCIARYGYRDMHKDDLEFERDLACSIAELIRSERTECNNFRHEDLEDNERMTVIGTSSTQLEGIQMCENETYASPIMGTSEIIKSEQLRKRVRLVLPESPKMNMDTRGELQELMEAREAGIAFIMGHSYVKAKKGSGWMKKLVINYGYDFLRKNSRGPSYAFSIPYASTLEGTTWLICRGEKQSTLFLGLYSSASSKCVASIP 799
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4987854 4995893 + CrPI670011_01g005680.1 Cre01g0568 488113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g0568 799 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 14 767 IPR003855 GO:0006813(PANTHER)|GO:0015079(InterPro)|GO:0015079(PANTHER)|GO:0016020(PANTHER)|GO:0016020(InterPro)|GO:0071805(InterPro)
Cre01g0568 799 Pfam K+ potassium transporter C-terminal domain 534 767 IPR053952 -
Cre01g0568 799 Pfam K+ potassium transporter integral membrane domain 22 521 IPR053951 -
Cre01g0568 799 NCBIfam potassium uptake protein 22 767 IPR003855 GO:0015079(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0568 Cre-Chr1:4987854 Cre07g0885 Cre-Chr7:7660789 6.60E-278 dispersed
Cre01g0568 Cre-Chr1:4987854 Cre10g1582 Cre-Chr10:29861172 0.00E+00 wgd
Cre01g0568 Cre-Chr1:4987854 Cre05g2687 Cre-Chr5:37815408 8.2e-313 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g0568 K03549 - csv:101218141 1483.0