Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g0579 ATGGCTCCTAGCTCTGTTGTTGTCACAATTGAGAAGCATAACACCTTCCCTTTAGTGGAAATCAATGCCTCTGACTCTTTGTTGCTTCCTGAGAAACAGAAGGCTGCTAGTCCCAAGCAGCTCACATGGGTTCTTCTTCTCAAAGCTCACAGAGCTCTGTTTTTCTTCTCATGGCTGGCTATGACTGTCAAGACTGTGTTTGCTTCTGTTAAGAAACGCATTGCTCATGCGGATATTAACGAAGAGGATTCCAAAAGCCGAGGGAAATTGTATAGGTTCATTAAGGCTTTTCTTGTTATTTCAATTGCGGGTTTGATCGTTGAAGTTGTTGCCCACTTCAAGAAGTGGAATCTGCGAATGATTCAGCCATTGGAGCTTGAGGTTCATGGGCTTGTTCAATGGTTTTATATTTCCTGGCTTTCGTTTCGAGTTGATTACATTGCTCCACTGGTATTAATGCTTTCCAAGTTCTGCATTGTTCTGTTCCTGATCCAATCTCTCGATCGTCTTGTTCTCTGTTTTGGTTGCTTTTGGATCAAGTTCAAGAAAATCAAACCCACGATTCAAGACGACGCTTATGATTTGGAAGATGCTTCAACTTTTCCTATGGTTCTTGTTCAAATTCCAATGTGTAATGAGAGAGAGGTCTATGCACAATCGATTGCTGCTGCTTGTGAGCTTGACTGGCCGAGGAATCGGATTTTGATTCAAGTTCTAGATGATTCAGATGATGGAAATCTTCAGCGTTTGATCAAAGAAGAAGTTCTGTCATGGAATGAAAAGGGTGTTAATATTGTTTATAGACATAGATTGATCCGAACTGGATACAAAGCTGGGAATCTCAAGTCTGCCATGGCTTGTGATTACGTTAAAGATTATGAGTTTGTAGCTATTTTAGATGCAGATTTCCAGCCCAACCCTGATTTCCTTAAACTGACTATCCCTCATTTCAAGGGAAATCCTGAGCTGGGTCTTGTTCAAGCTCGTTGGGCGTTTGTAAACAAGGAAGAAAACTTACTTACAAGACTCCAAAACATCAACTTGTGCTTCCACTTTGAAGTGGAGCAGCAAGTTAATGGCGTTTTCCTGAACTTCTTTGGATTCAATGGAACAGCAGGTGTTTGGAGAACGAAAGCACTTGAGGAATCCGGTGGCTGGCTTGAGCGGACGACTGTGGAAGATATGGATATTGCAGTTCGAGCACACTTGAAGGGATGGAAATTCATCTTCCTCAATGATGTCAAGGTGCTTTGTGAATTGCCTGAATCATATGAAGCTTATAAGAAACAGCAACACCGTTGGCATTCTGGTCCAATGCAGCTCTTCAGATTATGCCTCCCTTCAATCATTACTTCAAAGATATCGATATGGAAGAAGACCAACTTGATATTTCTGTTCTTTCTCCTTAGAAAACTCATACTTCCATTTTACTCATTCACTTTGTTTTGCATCATACTTCCATTGACAATGTTTATTCCAGAAGCAGAATTGCCTCTTTGGGTAATCTGCTACATCCCAGTCTTCATGTCCTTACTAAACATTCTTCCATCCCCAAAATCCTTCCCCTTCTTGATCCCATATCTCTTGTTTGAGAACACAATGTCTGTCACAAAGTTCAATGCCATGGTTTCGGGGCTATTCCAGCTGGGAAGTTCATACGAATGGGTTGTGACGAAGAAGACAGGACGATCATCCGAATCCGACTTCTTAGCATTCGCAGAGCGAGAGTCGAAAACATCAAACGAGGAGAAGATTCTGAGGAGACATTCGGAGTCGGGACTCGAGTTGTTGAGTAAATTGAACCAACAAGAGAGGCAAAAGGGTTCAAAGAAGAAGAGAAACAAGGTGTATAGAAAAGAGCTTGCTCTTGCTTTTCTGCTGCTCACTGCATCGGCTAGAAGCTTGCTGTCAGAACATGGAGTTCACTTCTATTTCTTGCTTTTCCAAGGTTTGTCATTCCTGGTGGTGGGTTTGGACTTGATTGGTGAGCAAATGAACTGA 2001 41.98 MAPSSVVVTIEKHNTFPLVEINASDSLLLPEKQKAASPKQLTWVLLLKAHRALFFFSWLAMTVKTVFASVKKRIAHADINEEDSKSRGKLYRFIKAFLVISIAGLIVEVVAHFKKWNLRMIQPLELEVHGLVQWFYISWLSFRVDYIAPLVLMLSKFCIVLFLIQSLDRLVLCFGCFWIKFKKIKPTIQDDAYDLEDASTFPMVLVQIPMCNEREVYAQSIAAACELDWPRNRILIQVLDDSDDGNLQRLIKEEVLSWNEKGVNIVYRHRLIRTGYKAGNLKSAMACDYVKDYEFVAILDADFQPNPDFLKLTIPHFKGNPELGLVQARWAFVNKEENLLTRLQNINLCFHFEVEQQVNGVFLNFFGFNGTAGVWRTKALEESGGWLERTTVEDMDIAVRAHLKGWKFIFLNDVKVLCELPESYEAYKKQQHRWHSGPMQLFRLCLPSIITSKISIWKKTNLIFLFFLLRKLILPFYSFTLFCIILPLTMFIPEAELPLWVICYIPVFMSLLNILPSPKSFPFLIPYLLFENTMSVTKFNAMVSGLFQLGSSYEWVVTKKTGRSSESDFLAFAERESKTSNEEKILRRHSESGLELLSKLNQQERQKGSKKKRNKVYRKELALAFLLLTASARSLLSEHGVHFYFLLFQGLSFLVVGLDLIGEQMN 666
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5071716 5074004 - CrPI670011_01g005790.1 Cre01g0579 488124

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g0579 666 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 118 665 - GO:0005794(PANTHER)|GO:0016757(PANTHER)
Cre01g0579 666 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 194 421 IPR029044 -
Cre01g0579 666 Pfam Glycosyl transferase family group 2 296 502 IPR001173 -
Cre01g0579 666 Coils Coil 600 620 - -
Cre01g0579 666 FunFam probable xyloglucan glycosyltransferase 5 196 420 - -
Cre01g0579 666 SUPERFAMILY Nucleotide-diphospho-sugar transferases 204 504 IPR029044 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g0579 K20887 - - csv:101208151 1247.26
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0579 Cre-Chr1:5071716 Cre05g2806 Cre-Chr5:38791771 4.60E-269 dispersed
Cre01g0579 Cre-Chr1:5071716 Cre08g0758 Cre-Chr8:20623609 3.70E-109 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre01g0684 . 358 520 REM Transcription Factor Family AT1G49480 70.6 9.5e-57 217.2
Cre05g2806 . 1 695 REM Transcription Factor Family AT2G24630 77.2 0.0e+00 1087.8
Cre01g0579 . 6 666 REM Transcription Factor Family AT2G24630 69.5 1.8e-268 922.2
Cre05g2817 . 1 707 REM Transcription Factor Family AT2G24630 64.1 2.6e-262 901.7
Cre08g1618 . 5 698 REM Transcription Factor Family AT2G24630 66.8 2.2e-261 898.7
Cre09g0807 . 5 692 REM Transcription Factor Family AT2G24630 62.3 7.5e-246 847.0
Cre08g0758 . 26 404 REM Transcription Factor Family AT2G24630 52.0 7.8e-110 395.2
Cre05g2806 . 1 695 REM Transcription Factor Family AT2G24630 77.2 0.0e+00 1087.8
Cre01g0579 . 6 666 REM Transcription Factor Family AT2G24630 69.5 1.8e-268 922.2
Cre05g2817 . 1 707 REM Transcription Factor Family AT2G24630 64.1 2.6e-262 901.7
Cre08g1618 . 5 698 REM Transcription Factor Family AT2G24630 66.8 2.2e-261 898.7
Cre09g0807 . 5 692 REM Transcription Factor Family AT2G24630 62.3 7.5e-246 847.0
Cre08g0758 . 26 404 REM Transcription Factor Family AT2G24630 52.0 7.8e-110 395.2
Cre05g2806 . 1 695 REM Transcription Factor Family AT2G24630 77.2 0.0e+00 1087.8
Cre01g0579 . 6 666 REM Transcription Factor Family AT2G24630 69.5 1.8e-268 922.2
Cre05g2817 . 1 707 REM Transcription Factor Family AT2G24630 64.1 2.6e-262 901.7
Cre08g1618 . 5 698 REM Transcription Factor Family AT2G24630 66.8 2.2e-261 898.7
Cre09g0807 . 5 692 REM Transcription Factor Family AT2G24630 62.3 7.5e-246 847.0
Cre08g0758 . 26 404 REM Transcription Factor Family AT2G24630 52.0 7.8e-110 395.2
Cre01g0684 . 358 520 REM Transcription Factor Family AT1G49480 70.6 9.5e-57 217.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010069 0 1 0 0 0 1 2 1 1 1 2 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 33