Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g0585 ATGGAGTTTCAGGAGGGTTTGATGAAGTTTATGGTTCATAGACACATTAAACACAACTGGGTTTTAGAGAAGGATTCTCCATCGGTTGCAGTTTCAGAGATAACTAATAGTCCAAGGCGGAAATGGCGGATCTTCAGTCGGTCATCTTCTTCCCCATTTCCGTCAAAACCCCAATTGAAGGAAATACCCAAAGAATTGCTCTGTCCCATTTCTGGGTCTTTAATGGCGGACCCAGTAATTGTCTCCTCTGGTCATACTTTTGAAGCTGCGTGTGTTCAGGTTTGTAAAGATTTAGGGTTGAAGCCGACTCTATTAGATGGTACGAAGCCGGATTTCTCCTCTGTAATTCCAAATCTGGCTCTCAAATCCACCATTTTCAATTGGTGTAAAAACTCCTCTTCTGAACACCCCAAACCCCTCGATTTCTCCTCCGCTGAAAAGCTCGTTCGTAAATTCATGGCGGCCCACAGCGAAAGCGATGAGGAATTGATTCAAGGGGTTGCAGAGAATCCTGTGGTTCGATTCAACCACGCCGCCACTGAAGTCACTCGTCGAACCTCTCATTTCCACTCGAGCTCAGATGAATCTGTAAGCGCCGCCGTTCCAACTCTGCCCCTTCCTCTTGCGACTCGGCCGAGTTGCTGTTCTTCGTCTTCTTCCTCTGACATCGAGATCATTGGTACTCTAAACCTACCCGAAGAAGAAGAGATCATCGCGAAGCTTAAAAGCCCTCAGGTTATTGAGATTGAAGAGGCTGTGACTACGCTGAGAAAAATCACAAGAACTCGAGAGGACACTAGGGTTCATCTCTGTTCTCCTCTGATTCTCTCTGCTCTTCGATCTCTCATCGTCTCAAGGTATACTGGCGTTCAAGTGAATTCAGTTGCAGCGCTTGTAAATCTATCATTAGAGAATTTGAACAAGGTGAAGATCGTACGGTCGGGGATTCTCCCCAATTTGATTGATGTTCTGAAAGGGGGTTCGCCGGAGGTTCAGGAACATGCTGCCGGCGCCATTTTCAGCTTAGCTCTCGACGACGACAACAAGACGGCAATCGGCGTATTGGGTGCTCTGCCACCATTGATACGGCTGTTGGTATCCGACTCGGAGCAAACTCGGCACGACTCGGCTCTTGCTCTTTACCACTTATCGCACGTTCAGAGCAACCGTTCGAAGCTTGTGAAACTTGGTTCGGTGCCGGTATTTCTCGGGATGGTGAAATCCCGCCACATGGCCGGCCGTATTTTGCTGATTTTGTGTAATTTAGCAGCGTGTTTTGAGGGCCGGGCGGCGTTGTTGGACTCCGGCGCGGTGGAGTGTTTGGTGGGGATGTTGAGGGAGAACGAGTTGGACTCCGAGTCGACCCGGGAGAGTTGTGTGGCGGTTCTGTTCGGACTCAGTTACGGCGGTTTGAGGTTCAAGGGTCTGGCAAAAACCGCCGGAGCAATGGATGTTTTCATGGCAATGGAGAAAAATGGAAGTGAGAGATCAAAAGAGAAGGTGAAGAGGATCATGGAGTATATGAAAGCCAGAGATGAGGAAGCTGAGGATGTGAATTGGGAGGAATTGCTCGATTCAGGTTGTTTCGGCAGCCGAACTCGGTGTCGACTCGGTGCCGGAATGGACAGATCCACCGCCAACTCGTCCGAATTCTGA 1656 49.21 MEFQEGLMKFMVHRHIKHNWVLEKDSPSVAVSEITNSPRRKWRIFSRSSSSPFPSKPQLKEIPKELLCPISGSLMADPVIVSSGHTFEAACVQVCKDLGLKPTLLDGTKPDFSSVIPNLALKSTIFNWCKNSSSEHPKPLDFSSAEKLVRKFMAAHSESDEELIQGVAENPVVRFNHAATEVTRRTSHFHSSSDESVSAAVPTLPLPLATRPSCCSSSSSSDIEIIGTLNLPEEEEIIAKLKSPQVIEIEEAVTTLRKITRTREDTRVHLCSPLILSALRSLIVSRYTGVQVNSVAALVNLSLENLNKVKIVRSGILPNLIDVLKGGSPEVQEHAAGAIFSLALDDDNKTAIGVLGALPPLIRLLVSDSEQTRHDSALALYHLSHVQSNRSKLVKLGSVPVFLGMVKSRHMAGRILLILCNLAACFEGRAALLDSGAVECLVGMLRENELDSESTRESCVAVLFGLSYGGLRFKGLAKTAGAMDVFMAMEKNGSERSKEKVKRIMEYMKARDEEAEDVNWEELLDSGCFGSRTRCRLGAGMDRSTANSSEF 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5129103 5130758 - CrPI670011_01g005850.1 Cre01g0585 488130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g0585 551 ProSiteProfiles U-box domain profile. 61 135 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cre01g0585 551 Pfam Armadillo/beta-catenin-like repeat 345 384 IPR000225 GO:0005515(InterPro)
Cre01g0585 551 Pfam Armadillo/beta-catenin-like repeat 307 343 IPR000225 GO:0005515(InterPro)
Cre01g0585 551 FunFam RING-type E3 ubiquitin transferase 232 508 - -
Cre01g0585 551 Gene3D - 232 507 IPR011989 -
Cre01g0585 551 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 315 352 IPR000225 GO:0005515(InterPro)
Cre01g0585 551 SMART arm_5 263 303 IPR000225 GO:0005515(InterPro)
Cre01g0585 551 SMART arm_5 425 468 IPR000225 GO:0005515(InterPro)
Cre01g0585 551 SMART arm_5 345 385 IPR000225 GO:0005515(InterPro)
Cre01g0585 551 SMART arm_5 304 344 IPR000225 GO:0005515(InterPro)
Cre01g0585 551 FunFam RING-type E3 ubiquitin transferase 42 136 - -
Cre01g0585 551 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 135 IPR013083 -
Cre01g0585 551 SUPERFAMILY ARM repeat 237 498 IPR016024 -
Cre01g0585 551 PANTHER U BOX DOMAIN-CONTAINING 47 509 - -
Cre01g0585 551 SMART Ubox_2 65 128 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cre01g0585 551 SUPERFAMILY RING/U-box 56 138 - -
Cre01g0585 551 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 356 398 IPR000225 GO:0005515(InterPro)
Cre01g0585 551 Pfam U-box domain 62 132 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0585 Cre-Chr1:5129103 Cre11g1087 Cre-Chr11:8331211 1.70E-11 dispersed
Cre01g0585 Cre-Chr1:5129103 Cre01g1292 Cre-Chr1:26158037 7.90E-81 wgd
Cre01g0585 Cre-Chr1:5129103 Cre06g2539 Cre-Chr6:33029358 6.00E-97 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g0585 - - - 0.0