Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g0606 ATGAAGATCTCCAACTTCTTCCTCACATGGGTTTCTCTGAACCATCTTCTTCTTTTTCTTCTTCTACTTTGTGTTTCTCCATCTTTTTCTGTAGTTCCAGAAGACGATATAAGGTGTCTTCGAGGGGTTAAGAATGCGCTTGTTGATCCTCTCGGAAGGCTTAGTTCATGGGATTTCAAGAACACATCCGTTGGTCATCTCTGCAACAAATTCGTTGGTCTCTCCTGCTGGAACGACCGTGAGAATCGCATTCTCAGCCTCGAGCTTAAAGATATGAAGCTCTCCGGTTCAATTTCTGAAGACTTACAGTACTGTGTAAGCCTGCAGAAACTGGATCTGTCCGGCAATAGCTTTTCCGGCGCGATCCCGCCGCATATTTGTGAGTGGCTTCCGTATTTGGTTAGCATGGATTTGTCGAACAATCAATTTACCGGTCCTATTCCGGCTGATCTCGCTAGATGTTCTTATTTGAATTCGTTGATTTTGTCTGATAATGAGCTTTCTGGTACAATACCAGTTGAGCTCACGAGTCTGGGTAGACTTAACAAATTTTCTGTTGCGAACAATCAACTCACTGGTACGATTCCTTCATTTTTTGATAAATTTGGGAAGGAGGATTTTGATGGGAACAGTGACTTATGTGGAGGGCCTGTTGGATCTAGTTGTGGTGGGTTGAGCAAGAAGAATCTTGCGATTATTATAGCTGCTGGTGTGTTTGGTGCTGCGGCTTCTCTGTTGTTAGGTTTTGGGTTGTGGTGGTGGTATCATTCTAGAATGAACATGAAGAGGAGAAGGGGATATGGGGATGGGATTAGTGGGGATTGGGCTGATAGATTGAGAGCCTATAAGCTTGTTCAAGTTTCCTTGTTTCAAAAGCCTCTTGTGAAAGTTAAGTTGGCTGATTTGATGGCTGCTACTAATAATTTCAATTCTGAAAACATCATAGTTTCTTCTAGAACTGGGACTACTTATAGAGCTGTTCTTCCAGATGGCTCTGTGCTTGCTATAAAGCGGCTCAATACTTGCAAGCTCGGTGAGAAGCTGTTTCGAATGGAGATGAACAGGTTAGGATCGATCAGACACCCGAATTTGACACCCCTTTTGGGATTCTGTGTTGTGGAAGAGGAAAAGCTTTTGGTTTATAAGTATATGTCTAATGGGACTTTGTCCTCTTTGTTACATGGAAATGATGAGATATTGGATTGGCCAACTAGGTTTAGGATTGGTCTGGGTGCAGCTAGAGGTCTTGCTTGGCTTCACCATGGATGCCAGCCTCCATTCATGCATCAAAACATATGTTCTAGTGTAATTCTTGTGGATGAAGACTATGATGCTAGGATCATGGATTTTGGATTGGCAAGGTTGATGGCTTCAGATTCTCATGACAGTAGTTTTGTTAATGGAGACTTAGGGGAACTTGGTTACGTTGCTCCTGAGTACCCGAGCACCATGGTTGCATCTTTGAAGGGGGATGTTTATGGATTTGGGGTTGTGCTTTTGGAGTTGATCACTGGCCAAAAACCTCTAGAAGTCACCAAAGCAGAGGAAGGTTATAAGGGTAACTTGGTGGATTGGGTTAATCAGCTGAGTATGTCGGGTCGAATTAAGGATGTTATTGATAAAGATCTTTGTGGGAAAGGGAACGATGAGGAAATCTTACAATTTCTGAAAATTACAATGAACTGCATTGTTTCTCGGCCCAAAGACAGGTGGTCTATGTATCAGGTTTATCAATCAATGAAAACCATGGCTAAAGACTACAGTTTCCCTGAACCAGATGATGAATTCCCACTTTTACTTGGCAAGGGAGATAATGAACCCATGTAG 1827 42.64 MKISNFFLTWVSLNHLLLFLLLLCVSPSFSVVPEDDIRCLRGVKNALVDPLGRLSSWDFKNTSVGHLCNKFVGLSCWNDRENRILSLELKDMKLSGSISEDLQYCVSLQKLDLSGNSFSGAIPPHICEWLPYLVSMDLSNNQFTGPIPADLARCSYLNSLILSDNELSGTIPVELTSLGRLNKFSVANNQLTGTIPSFFDKFGKEDFDGNSDLCGGPVGSSCGGLSKKNLAIIIAAGVFGAAASLLLGFGLWWWYHSRMNMKRRRGYGDGISGDWADRLRAYKLVQVSLFQKPLVKVKLADLMAATNNFNSENIIVSSRTGTTYRAVLPDGSVLAIKRLNTCKLGEKLFRMEMNRLGSIRHPNLTPLLGFCVVEEEKLLVYKYMSNGTLSSLLHGNDEILDWPTRFRIGLGAARGLAWLHHGCQPPFMHQNICSSVILVDEDYDARIMDFGLARLMASDSHDSSFVNGDLGELGYVAPEYPSTMVASLKGDVYGFGVVLLELITGQKPLEVTKAEEGYKGNLVDWVNQLSMSGRIKDVIDKDLCGKGNDEEILQFLKITMNCIVSRPKDRWSMYQVYQSMKTMAKDYSFPEPDDEFPLLLGKGDNEPM 608
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5325444 5327270 + CrPI670011_01g006060.1 Cre01g0606 488151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g0606 608 SUPERFAMILY Protein kinase-like (PK-like) 286 579 IPR011009 -
Cre01g0606 608 Pfam Leucine Rich Repeat 107 128 IPR001611 GO:0005515(InterPro)
Cre01g0606 608 Pfam Leucine Rich Repeat 157 178 IPR001611 GO:0005515(InterPro)
Cre01g0606 608 Pfam Leucine Rich Repeat 133 154 IPR001611 GO:0005515(InterPro)
Cre01g0606 608 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 384 602 - -
Cre01g0606 608 Pfam Leucine rich repeat N-terminal domain 34 77 IPR013210 -
Cre01g0606 608 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 83 582 IPR051564 GO:0016020(PANTHER)
Cre01g0606 608 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 271 383 - -
Cre01g0606 608 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 33 223 - -
Cre01g0606 608 Gene3D Transferase(Phosphotransferase) domain 1 384 594 - -
Cre01g0606 608 Gene3D Phosphorylase Kinase; domain 1 269 383 - -
Cre01g0606 608 Gene3D Ribonuclease Inhibitor 34 224 IPR032675 -
Cre01g0606 608 ProSiteProfiles Protein kinase domain profile. 309 583 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre01g0606 608 Pfam Protein tyrosine and serine/threonine kinase 333 516 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre01g0606 608 SUPERFAMILY L domain-like 33 209 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0606 Cre-Chr1:5325444 Cre05g0980 Cre-Chr5:9047551 1.10E-67 dispersed
Cre09g0756 Cre-Chr9:7405156 Cre01g0606 Cre-Chr1:5325444 2.80E-114 transposed
Cre01g0606 Cre-Chr1:5325444 Cre02g2149 Cre-Chr2:35080213 2.60E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63806 PF07714 PK_Tyr_Ser-Thr 1.30E-29 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g0606 - - - 0.0