Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g0622 ATGGGTTTGGCACCTAATGATTCCAAGCTCGAGACATGGATTGAGGGGAAGTCAAAGACAGCTAGCGAGAAGAAGAAGAAGAAGGAGAATGAGTTGGAGGAGGAGACTGGATGTTGGGTTAAGTTGAAGTTCATAGGGAGTTGCATTCCTTCTAGATCAAAGGTTGATAGTTCTCTGAGTGGATCAAAGGTCGATAGCTTCATCAGTGGCACCAGTACCCATTGCGATAGTAAACCTAAACTTGATGAAAAAAGAGATATTCTGGTTACTGCATTGGGGTCATCAGCGACAACTGATAATGCTGAAAGTAGTTCGTCCACGCCCAAGCTCAGTGCAGAGCTGAAGGTTGCTTCTCGGCTTCGTAAGTTCACTTTTAATGAGCTTAAGTTAGCCACAAGAAATTTCCGACCTGAGAGCCTTCTTGGCGAGGGAGGTTTTGGTTGTGTTTTCAAAGGATGGATTGAGGAGAATGGAACTGCTCCTGCTAAACCTGGAACTGGGCTTACAGTTGCAGTCAAGACTCTTAATCATGACGGCCTACAAGGTCACAAGGAGTGGATGGCTGAAGTTAACTTCCTCGGTGACCTCAACCATTCTAATCTTGTAAGATTGATTGGTTGCTGCATTGAAGATGATCAAAGGTTATTAGTTTATGAGTTCATGCCTCGTGGAAGTTTGGAGAATCACCTCTTCAGAAGGCCCTTGCCACTTCCTTGGTCTATTAGATTGAAAATTGCGCTTGGTGCTGCTAAAGGCCTTGCTTTTCTTCATGAAGAAGCTGAAAGACCAGTGATATATCGTGATTTTAAAACGTCTAATATTTTATTAGATGCGGACTACAATGCTAAACTCTCAGATTTTGGACTCGCAAAAGATGGTCCTGAGGGTGACAAAACTCATGTTTCAACTCGGGTTATGGGAACCTATGGTTATGCAGCTCCAGAATATGTGATGACTGGGCATTTGACAGCAAAAAGCGATGTCTACAGTTTTGGAGTTGTCTTGCTTGAAATGCTAACCGGTCGAAGATCGATGGATAAAAATAGACCGAATGGGGAGCACAACCTTGTTGAATGGGCTAGACCCTTGCTTGGAGACAAGAGGAAGTTCTACCGGCTGATAGATCCTCGCCTTGAATGTCACTTCTCGATCAAAGGTGCACAAAAAGCTGCCGAGCTTGCAGCTCACTGCCTTAGTAGAGATCCTAAAGCCAGACCTATGATGAGTGAAGTTGTTGAAATTTTAAAACCTTTGCCAAACCTCAAGGACATGGCAAGTTCTTCCTATTACTTCCAAACCATGCAAGCAGACCGTGCCAGGTCCAACCCCAATGCTAAAAGTGTCGTCCGGACGCAGTCGATGTTTGTGGCAAGGAATGGGCAACACATTAGAAGCTTATCAAGTCCAAATGGGCCTCATGCTTCTCCATATAATTATCCTCATCAGTCACCGAAACCTGACAGGAGATAA 1470 44.35 MGLAPNDSKLETWIEGKSKTASEKKKKKENELEEETGCWVKLKFIGSCIPSRSKVDSSLSGSKVDSFISGTSTHCDSKPKLDEKRDILVTALGSSATTDNAESSSSTPKLSAELKVASRLRKFTFNELKLATRNFRPESLLGEGGFGCVFKGWIEENGTAPAKPGTGLTVAVKTLNHDGLQGHKEWMAEVNFLGDLNHSNLVRLIGCCIEDDQRLLVYEFMPRGSLENHLFRRPLPLPWSIRLKIALGAAKGLAFLHEEAERPVIYRDFKTSNILLDADYNAKLSDFGLAKDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTAKSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWARPLLGDKRKFYRLIDPRLECHFSIKGAQKAAELAAHCLSRDPKARPMMSEVVEILKPLPNLKDMASSSYYFQTMQADRARSNPNAKSVVRTQSMFVARNGQHIRSLSSPNGPHASPYNYPHQSPKPDRR 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5517637 5522142 + CrPI670011_01g006220.1 Cre01g0622 488167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g0622 489 MobiDBLite consensus disorder prediction 12 34 - -
Cre01g0622 489 MobiDBLite consensus disorder prediction 1 34 - -
Cre01g0622 489 FunFam Probable serine/threonine-protein kinase PBL8 221 436 - -
Cre01g0622 489 Gene3D Transferase(Phosphotransferase) domain 1 221 438 - -
Cre01g0622 489 PANTHER OS01G0588500 PROTEIN-RELATED 106 419 IPR050823 -
Cre01g0622 489 ProSiteProfiles Protein kinase domain profile. 135 421 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre01g0622 489 CDD STKc_IRAK 141 418 - -
Cre01g0622 489 MobiDBLite consensus disorder prediction 463 489 - -
Cre01g0622 489 ProSitePatterns Serine/Threonine protein kinases active-site signature. 264 276 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre01g0622 489 ProSitePatterns Protein kinases ATP-binding region signature. 141 173 IPR017441 GO:0005524(InterPro)
Cre01g0622 489 SUPERFAMILY Protein kinase-like (PK-like) 112 415 IPR011009 -
Cre01g0622 489 Gene3D Phosphorylase Kinase; domain 1 110 220 - -
Cre01g0622 489 MobiDBLite consensus disorder prediction 463 477 - -
Cre01g0622 489 FunFam Serine/threonine-protein kinase BIK1 102 220 - -
Cre01g0622 489 Pfam Protein tyrosine and serine/threonine kinase 139 415 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0622 Cre-Chr1:5517637 Cre11g0808 Cre-Chr11:5328199 1.60E-141 dispersed
Cre04g0738 Cre-Chr4:25597569 Cre01g0622 Cre-Chr1:5517637 1.30E-54 dispersed
Cre08g0881 Cre-Chr8:21924314 Cre01g0622 Cre-Chr1:5517637 1.80E-34 dispersed
Cre01g0622 Cre-Chr1:5517637 Cre05g2627 Cre-Chr5:37330419 5.20E-185 wgd
Cre01g0622 Cre-Chr1:5517637 Cre08g0836 Cre-Chr8:21449392 2.80E-114 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63807 PF07714 PK_Tyr_Ser-Thr 8.20E-48 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g0622 - - - 0.0