Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g0624 ATGGCTTCCCCTCACCATTCCCATAGCTTCATGTTCCAATCCCGCCCCGCCGATCACCACGAATACGTCCCCTCTGCTTCCTTCAACGCCATCCCCTCCTGCCCTCCTCACCTCTACTTTCACGATGGAGTGGTTCCAGTGATGATGAAGAGATCGATGTCGTTTTCGGGAGTCGAAAACGGGTGCGAGGAAGTGAATGGCGACGAGGGGTTATCAGACGATGGATTGGCATTGGGAGAGAAGAAGAAGCGATTAAATTTAGAGCAAGTGAAGGCTTTGGAGAAGAGCTTTGAGTTAGGGAATAAGCTTGAGCCAGAGAGGAAAATGCAGCTAGCCAAAGCTTTGGGGTTGCAGCCAAGACAGATTGCTATTTGGTTTCAGAATAGAAGGGCCAGATGGAAAACCAAGCAGTTGGAGAGAGATTATGAAGTGTTGAAGAAACAGTTTGAAGCTCTTAAAGCTGACAATGATGTACTTCAAGCTCAAAATACCAAACTCCATGCAGAGCTATTAGCATTAAAAACGAAAGACTCCGGCGAGGCAGCGGGGGGCGGCGCCACCATGAACCTAAAGAAAGAAAACGAACGCTGTTGGAGCAGCGACAACAGTTGCGACATTAATCTCGACATCTCAAAGACACAAGCACCAATAAACGGCAGCGGCGGTGGTGGCGGAGGTAGAGCATGTTCTCAACCAGGAATAATCAAAGATCTTTTCCCATCGGCGGCGTTCCGATCCGCCGCCATAACGCAGCTGCTTCAACACGGGTCGTCCAGATCAACGGTGGACCATCCTCAAGTGATTCAAGAAGAAAGCTTCTCTCAAATGTTCAATGGCATTGAAGAACAACAACAAACTGCAGCAGCAGCTGGGTTTTGGCCATGGAGTTCAGATCAAAATTCCCATTTTCATTAA 915 48.52 MASPHHSHSFMFQSRPADHHEYVPSASFNAIPSCPPHLYFHDGVVPVMMKRSMSFSGVENGCEEVNGDEGLSDDGLALGEKKKRLNLEQVKALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLERDYEVLKKQFEALKADNDVLQAQNTKLHAELLALKTKDSGEAAGGGATMNLKKENERCWSSDNSCDINLDISKTQAPINGSGGGGGGRACSQPGIIKDLFPSAAFRSAAITQLLQHGSSRSTVDHPQVIQEESFSQMFNGIEEQQQTAAAAGFWPWSSDQNSHFH 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5540590 5543455 - CrPI670011_01g006240.1 Cre01g0624 488169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g0624 304 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 58 214 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Cre01g0624 304 Gene3D - 77 144 - -
Cre01g0624 304 FunFam Homeobox-leucine zipper protein ATHB-13 73 140 - -
Cre01g0624 304 ProSitePatterns 'Homeobox' domain signature. 111 134 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cre01g0624 304 PRINTS Lambda-repressor HTH signature 116 132 IPR000047 GO:0003677(InterPro)
Cre01g0624 304 PRINTS Lambda-repressor HTH signature 107 116 IPR000047 GO:0003677(InterPro)
Cre01g0624 304 Pfam Homeobox associated leucine zipper 136 176 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cre01g0624 304 ProSiteProfiles 'Homeobox' domain profile. 80 136 IPR001356 GO:0003677(InterPro)
Cre01g0624 304 SUPERFAMILY Homeodomain-like 79 138 IPR009057 -
Cre01g0624 304 Coils Coil 128 169 - -
Cre01g0624 304 SMART HOX_1 79 140 IPR001356 GO:0003677(InterPro)
Cre01g0624 304 Pfam Homeodomain 81 134 IPR001356 GO:0003677(InterPro)
Cre01g0624 304 CDD homeodomain 81 137 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0624 Cre-Chr1:5540590 Cre10g1017 Cre-Chr10:19305654 1.80E-26 dispersed
Cre01g0624 Cre-Chr1:5540590 Cre01g1323 Cre-Chr1:26449073 5.20E-26 wgd
Cre01g0624 Cre-Chr1:5540590 Cre05g2616 Cre-Chr5:37241809 4.30E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52990 PF00046 Homeodomain 2.90E-15 CL0123 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g0624 K09338 - csv:101212093 565.459