Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g0633 ATGAGGAAGCGTCAAGTTGTGCTTAGAAGATCAGAAGAACCCTCAAGGGAGACTGTGGCTTCCTCTTTCACAGTAAGGAGTGTAAGATATGGGGAGTGCCAAAAGAACCATGCCGCTGGGGTCGGAGGGTACGCAGTTGACGGGTGTCGAGAATTCATGGCGAGTGGCGACGAAGGGACGACCGCTGCACTGACTTGCGCTGCCTGCGGTTGCCACCGGAATTTCCATAGAAGGCAAGTTGGAACTGAGGTAGTTTGCGATTGCTCTTCATCACCCTCAAATGGAACTTGA 291 52.58 MRKRQVVLRRSEEPSRETVASSFTVRSVRYGECQKNHAAGVGGYAVDGCREFMASGDEGTTAALTCAACGCHRNFHRRQVGTEVVCDCSSSPSNGT 96
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5756127 5756417 - CrPI670011_01g006330.1 Cre01g0633 488178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g0633 96 Pfam ZF-HD protein dimerisation region 28 80 IPR006456 -
Cre01g0633 96 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 30 79 IPR006456 -
Cre01g0633 96 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 17 79 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Cre01g0633 96 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 29 79 IPR006456 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0633 Cre-Chr1:5756127 Cre08g1088 Cre-Chr8:23971898 6.30E-18 dispersed
Cre01g0633 Cre-Chr1:5756127 Cre01g0634 Cre-Chr1:5768084 2.30E-12 tandem
Cre01g0633 Cre-Chr1:5756127 Cre01g1557 Cre-Chr1:28745342 1.80E-25 wgd
Cre01g0633 Cre-Chr1:5756127 Cre10g1638 Cre-Chr10:30525597 2.70E-13 wgd
Cre01g0633 Cre-Chr1:5756127 Cre05g2599 Cre-Chr5:37098373 2.70E-13 wgd
Cre01g0633 Cre-Chr1:5756127 Cre06g2490 Cre-Chr6:32620042 5.30E-25 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52993 PF04770 ZF-HD_dimer 3.30E-30 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g0633 - - - 0.0