Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g0634 ATGGATTTAGCCCCAGCTCCCATCACAACTAGTAGTAATAACACAAAATCTCCCGACGCTGACTCCGATACTCCGACAAAGATTCCGCCGTCTTCTTCCCTAAAATCCCTTCCCTTCACCAACGGTGTTCTCAAGCGCCACCATCACCGTCAACCGTCTGTCATTGTTTCTTACAAAGAATGTCTCAAAAATCACGCTGCCAGTTTAGGAGCTCACGCCTTGGATGGATGTGGCGAATTTATGCCTTCCCCTTCTGCCACACCCACTGATCCCACATCGCTTAAATGCGCCGCATGCGGCTGTCACCGGAATTTCCACCGCCGTGACCCGGAAGATCCAATCTCAACTTTAGCTATCAATACGGCGCCTACTCATGTTATTGAGTATCAGCCTCACCACCGTCATCACCCCCCACCGCCGTCGCTTCCCGGGAACCGAAGCCCGAATTCGGCATCTCCTCCGCCGATCTCGTCGTCGTACTACCCATCTGCGCCGCATATGCTACTGGCGCTTTCAGCCGGGTTGTCGGGTCGTCCCCCGGAAAATATCACTCAGGGGAATAATTCGGTGCTGACGGTGAGTCCGAACACCCGGAAACGGTTTCGGACGAAATTTAGCAATGAGCAGAAGGAAAAAATGCTGGATTTCGCGGAACGAGTTGGATGGAAAATGCAAAAGAGAGATGAAGATTTGGTTCGAGATTTTTGCAATCAAGTTGGAGTTGAAAGAGGAGTTCTCAAAGTATGGATGCATAACAACAAGAATACCATGGGAAAAAAGCCCGACTCCAATGGCACCACCACCGCCGCCGCCGCAACCGCCGCCGTCAACAACAACGAAGATGGACCAGATGGAGGCTTACATATGCATGTTGGCTCAAATGGGTCATCTTCTTCTTCTTGA 903 51.16 MDLAPAPITTSSNNTKSPDADSDTPTKIPPSSSLKSLPFTNGVLKRHHHRQPSVIVSYKECLKNHAASLGAHALDGCGEFMPSPSATPTDPTSLKCAACGCHRNFHRRDPEDPISTLAINTAPTHVIEYQPHHRHHPPPPSLPGNRSPNSASPPPISSSYYPSAPHMLLALSAGLSGRPPENITQGNNSVLTVSPNTRKRFRTKFSNEQKEKMLDFAERVGWKMQKRDEDLVRDFCNQVGVERGVLKVWMHNNKNTMGKKPDSNGTTTAAAATAAVNNNEDGPDGGLHMHVGSNGSSSSS 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5768084 5768986 - CrPI670011_01g006340.1 Cre01g0634 488179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g0634 300 MobiDBLite consensus disorder prediction 136 150 - -
Cre01g0634 300 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 58 109 IPR006456 -
Cre01g0634 300 Gene3D - 185 259 - -
Cre01g0634 300 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 41 256 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Cre01g0634 300 MobiDBLite consensus disorder prediction 1 38 - -
Cre01g0634 300 SUPERFAMILY Homeodomain-like 186 259 IPR009057 -
Cre01g0634 300 MobiDBLite consensus disorder prediction 256 275 - -
Cre01g0634 300 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 58 109 IPR006456 -
Cre01g0634 300 MobiDBLite consensus disorder prediction 130 159 - -
Cre01g0634 300 NCBIfam homeobox domain, ZF-HD class 198 255 IPR006455 -
Cre01g0634 300 MobiDBLite consensus disorder prediction 254 300 - -
Cre01g0634 300 FunFam Zinc-finger homeodomain protein 2 185 259 - -
Cre01g0634 300 Pfam ZF-HD protein dimerisation region 56 110 IPR006456 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0634 Cre-Chr1:5768084 Cre10g1638 Cre-Chr10:30525597 3.00E-82 dispersed
Cre01g0633 Cre-Chr1:5756127 Cre01g0634 Cre-Chr1:5768084 2.30E-12 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52994 PF04770 ZF-HD_dimer 9.80E-29 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g0634 - - - 0.0