Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g0634 ATGGATTTAGCCCCAGCTCCCATCACAACTAGTAGTAATAACACAAAATCTCCCGACGCTGACTCCGATACTCCGACAAAGATTCCGCCGTCTTCTTCCCTAAAATCCCTTCCCTTCACCAACGGTGTTCTCAAGCGCCACCATCACCGTCAACCGTCTGTCATTGTTTCTTACAAAGAATGTCTCAAAAATCACGCTGCCAGTTTAGGAGCTCACGCCTTGGATGGATGTGGCGAATTTATGCCTTCCCCTTCTGCCACACCCACTGATCCCACATCGCTTAAATGCGCCGCATGCGGCTGTCACCGGAATTTCCACCGCCGTGACCCGGAAGATCCAATCTCAACTTTAGCTATCAATACGGCGCCTACTCATGTTATTGAGTATCAGCCTCACCACCGTCATCACCCCCCACCGCCGTCGCTTCCCGGGAACCGAAGCCCGAATTCGGCATCTCCTCCGCCGATCTCGTCGTCGTACTACCCATCTGCGCCGCATATGCTACTGGCGCTTTCAGCCGGGTTGTCGGGTCGTCCCCCGGAAAATATCACTCAGGGGAATAATTCGGTGCTGACGGTGAGTCCGAACACCCGGAAACGGTTTCGGACGAAATTTAGCAATGAGCAGAAGGAAAAAATGCTGGATTTCGCGGAACGAGTTGGATGGAAAATGCAAAAGAGAGATGAAGATTTGGTTCGAGATTTTTGCAATCAAGTTGGAGTTGAAAGAGGAGTTCTCAAAGTATGGATGCATAACAACAAGAATACCATGGGAAAAAAGCCCGACTCCAATGGCACCACCACCGCCGCCGCCGCAACCGCCGCCGTCAACAACAACGAAGATGGACCAGATGGAGGCTTACATATGCATGTTGGCTCAAATGGGTCATCTTCTTCTTCTTGA 903 51.16 MDLAPAPITTSSNNTKSPDADSDTPTKIPPSSSLKSLPFTNGVLKRHHHRQPSVIVSYKECLKNHAASLGAHALDGCGEFMPSPSATPTDPTSLKCAACGCHRNFHRRDPEDPISTLAINTAPTHVIEYQPHHRHHPPPPSLPGNRSPNSASPPPISSSYYPSAPHMLLALSAGLSGRPPENITQGNNSVLTVSPNTRKRFRTKFSNEQKEKMLDFAERVGWKMQKRDEDLVRDFCNQVGVERGVLKVWMHNNKNTMGKKPDSNGTTTAAAATAAVNNNEDGPDGGLHMHVGSNGSSSSS 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5768084 5768986 - CrPI670011_01g006340.1 Cre01g0634 488179

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g0634 300 MobiDBLite consensus disorder prediction 136 150 - -
Cre01g0634 300 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 58 109 IPR006456 -
Cre01g0634 300 Gene3D - 185 259 - -
Cre01g0634 300 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 41 256 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Cre01g0634 300 MobiDBLite consensus disorder prediction 1 38 - -
Cre01g0634 300 SUPERFAMILY Homeodomain-like 186 259 IPR009057 -
Cre01g0634 300 MobiDBLite consensus disorder prediction 256 275 - -
Cre01g0634 300 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 58 109 IPR006456 -
Cre01g0634 300 MobiDBLite consensus disorder prediction 130 159 - -
Cre01g0634 300 NCBIfam homeobox domain, ZF-HD class 198 255 IPR006455 -
Cre01g0634 300 MobiDBLite consensus disorder prediction 254 300 - -
Cre01g0634 300 FunFam Zinc-finger homeodomain protein 2 185 259 - -
Cre01g0634 300 Pfam ZF-HD protein dimerisation region 56 110 IPR006456 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g0634 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0634 Cre-Chr1:5768084 Cre10g1638 Cre-Chr10:30525597 3.00E-82 dispersed
Cre01g0633 Cre-Chr1:5756127 Cre01g0634 Cre-Chr1:5768084 2.30E-12 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre08g1088 . 52 248 ZF-HD Transcription Factor Family AT5G65410 50.5 1.6e-45 180.3
Cre08g1088 . 22 244 ZF-HD Transcription Factor Family AT4G24660 50.9 3.0e-50 195.7
Cre11g0510 . 80 289 ZF-HD Transcription Factor Family AT2G02540 52.8 1.3e-51 200.7
Cre11g0510 . 77 289 ZF-HD Transcription Factor Family AT1G14440 54.6 4.2e-55 212.2
Cre04g1570 . 129 335 ZF-HD Transcription Factor Family AT2G18350 52.9 3.4e-50 195.7
Cre10g1638 . 12 268 ZF-HD Transcription Factor Family AT5G15210 53.9 3.2e-51 199.1
Cre01g0634 . 6 254 ZF-HD Transcription Factor Family AT5G15210 52.6 1.2e-50 197.2
Cre10g1638 . 22 281 ZF-HD Transcription Factor Family AT3G28920 61.5 1.1e-60 230.7
Cre01g0634 . 16 256 ZF-HD Transcription Factor Family AT3G28920 59.3 3.1e-58 222.6
Cre01g0634 . 24 260 ZF-HD Transcription Factor Family AT5G39760 56.4 3.0e-51 199.5
Cre10g1638 . 30 271 ZF-HD Transcription Factor Family AT5G39760 56.1 2.4e-48 189.9
Cre01g0634 . 56 257 ZF-HD Transcription Factor Family AT1G69600 50.2 1.5e-47 186.8
Cre11g0510 . 80 289 ZF-HD Transcription Factor Family AT2G02540 52.8 1.3e-51 200.7
Cre08g1088 . 22 244 ZF-HD Transcription Factor Family AT4G24660 50.9 3.0e-50 195.7
Cre01g0634 . 24 260 ZF-HD Transcription Factor Family AT5G39760 56.4 3.0e-51 199.5
Cre10g1638 . 30 271 ZF-HD Transcription Factor Family AT5G39760 56.1 2.4e-48 189.9
Cre04g1570 . 129 335 ZF-HD Transcription Factor Family AT2G18350 52.9 3.4e-50 195.7
Cre08g1088 . 52 248 ZF-HD Transcription Factor Family AT5G65410 50.5 1.6e-45 180.3
Cre01g0634 . 56 257 ZF-HD Transcription Factor Family AT1G69600 50.2 1.5e-47 186.8
Cre10g1638 . 12 268 ZF-HD Transcription Factor Family AT5G15210 53.9 3.2e-51 199.1
Cre01g0634 . 6 254 ZF-HD Transcription Factor Family AT5G15210 52.6 1.2e-50 197.2
Cre11g0510 . 77 289 ZF-HD Transcription Factor Family AT1G14440 54.6 4.2e-55 212.2
Cre10g1638 . 22 281 ZF-HD Transcription Factor Family AT3G28920 61.5 1.1e-60 230.7
Cre01g0634 . 16 256 ZF-HD Transcription Factor Family AT3G28920 59.3 3.1e-58 222.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001346 3 2 3 3 3 2 4 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 3 2 2 3 2 3 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52994 PF04770 ZF-HD_dimer 9.80E-29 No_clan Cre TF