Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g0644 ATGGCTTCAATGGAGTTCCTAATCCTCCAATTGGGTCTTCTTTTTATGGTCTCATCTGTTAATGCCAATTATGGAGGTTGGATCAACGCTCATGCCACTTTCTATGGTGGAAGCGATGCATCTGGGACAATGGGAGGGGCTTGTGGGTATGGTAATTTGTATAGCCAAGGCTATGGAACTAACACTGCGGCGCTGAGCACAGCGTTGTTTGATAATGGACTCAGCTGTGGCGCTTGCTTTGAGCTACGGTGTGTGAACGACCCCCAATGGTGTCTTCCAGGCACCATCGTTGTCACTGCCACTAATTTCTGCCCTCCTGGCGGCTGGTGCGACCCTCCCAACCATCATTTTGACCTCTCTCAGCCTATCTTCCAACACATTGCCCAATATCGCGCCGGAATTGTCCCCGTCGCTTATCGCAGAGTAAGGTGCAGGAGAAGTGGGGGAATAAGATTCACAATCAATGGGCATTCATATTTCAATTTGGTGTTGGTGACAAACGTGGGGGGCGCCGGAGATGTACATGCCGTGGCGATTAAGGGTTCGAAAACCAGATGGCAACCGATGTCTAGAAATTGGGGGCAAAATTGGCAATCCAACTCTTATCTGAACGGACAGAGTCTATCGTTTTTGGTCACCGCCAGCGACGGACGGCGAGTGCTCTCCTACAACGTGGCTCCCTCCGGCTGGTCCTTTGGACAGACTTATGTCGGCGGACAATTTCGTTATTAA 732 50.55 MASMEFLILQLGLLFMVSSVNANYGGWINAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFDNGLSCGACFELRCVNDPQWCLPGTIVVTATNFCPPGGWCDPPNHHFDLSQPIFQHIAQYRAGIVPVAYRRVRCRRSGGIRFTINGHSYFNLVLVTNVGGAGDVHAVAIKGSKTRWQPMSRNWGQNWQSNSYLNGQSLSFLVTASDGRRVLSYNVAPSGWSFGQTYVGGQFRY 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5873567 5874454 - CrPI670011_01g006440.1 Cre01g0644 488189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g0644 243 Gene3D - 149 241 IPR036749 -
Cre01g0644 243 Gene3D - 15 145 IPR036908 -
Cre01g0644 243 Pfam Lytic transglycolase 62 139 IPR009009 -
Cre01g0644 243 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 159 238 IPR007117 -
Cre01g0644 243 SUPERFAMILY PHL pollen allergen 146 237 IPR036749 -
Cre01g0644 243 PRINTS Expansin/Lol pI family signature 186 200 IPR007118 GO:0005576(InterPro)
Cre01g0644 243 PRINTS Expansin/Lol pI family signature 132 148 IPR007118 GO:0005576(InterPro)
Cre01g0644 243 PRINTS Expansin/Lol pI family signature 224 238 IPR007118 GO:0005576(InterPro)
Cre01g0644 243 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576(InterPro)
Cre01g0644 243 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576(InterPro)
Cre01g0644 243 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576(InterPro)
Cre01g0644 243 PRINTS Expansin signature 124 137 IPR002963 GO:0009664(InterPro)
Cre01g0644 243 PRINTS Expansin signature 96 106 IPR002963 GO:0009664(InterPro)
Cre01g0644 243 PRINTS Expansin signature 84 95 IPR002963 GO:0009664(InterPro)
Cre01g0644 243 PRINTS Expansin signature 57 71 IPR002963 GO:0009664(InterPro)
Cre01g0644 243 PRINTS Expansin signature 107 124 IPR002963 GO:0009664(InterPro)
Cre01g0644 243 PRINTS Expansin signature 148 160 IPR002963 GO:0009664(InterPro)
Cre01g0644 243 PRINTS Expansin signature 224 240 IPR002963 GO:0009664(InterPro)
Cre01g0644 243 PRINTS Expansin signature 195 216 IPR002963 GO:0009664(InterPro)
Cre01g0644 243 PRINTS Expansin signature 160 181 IPR002963 GO:0009664(InterPro)
Cre01g0644 243 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 149 IPR007112 -
Cre01g0644 243 SMART dpbb_1 62 139 IPR007112 -
Cre01g0644 243 Pfam Expansin C-terminal domain 150 227 IPR007117 -
Cre01g0644 243 FunFam Expansin 149 241 - -
Cre01g0644 243 CDD DPBB_EXPA_N 26 144 - -
Cre01g0644 243 SUPERFAMILY Barwin-like endoglucanases 26 167 IPR036908 -
Cre01g0644 243 FunFam Expansin 16 145 - -
Cre01g0644 243 PANTHER EXPANSIN-A15 14 241 IPR002963 GO:0009664(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0644 Cre-Chr1:5873567 Cre11g1406 Cre-Chr11:18373768 2.00E-105 dispersed
Cre01g0644 Cre-Chr1:5873567 Cre01g1547 Cre-Chr1:28666400 1.80E-93 wgd
Cre01g0644 Cre-Chr1:5873567 Cre05g2585 Cre-Chr5:37029535 7.70E-113 wgd
Cre01g0644 Cre-Chr1:5873567 Cre06g2477 Cre-Chr6:32556763 9.70E-108 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g0644 K20628 - csv:101220358 474.552