Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g0670 ATGGATGACTGTATCAGCAGCGATGAGGACTACTATGACTCCGATCGAGACTCTCTCCATGGTCTTGAGAACGAGGACTCTGAAATTCAGTGGGTTCCTAAAGGTCCCGCGACTAAGGTTATTACGAAGGAATCTCTCCTTGCGGCACAGAAGGAGGATATGCGTAGAGTGATGGACTTGCTATCGTTGAGGGAATACCATGCTCGGACCTTACTCATTCATTACCGATGGGATGTAGAGAAATTGTTTGCAGTACTTGTGGAGAAAGGGAAAAGTCACTTGTTTGCTACAGCTGGTGTTACTATGATTGAGGATCGAAGTAACAGTTCCTCTGAGCCTTCTTCCATGGTGATGTGTGATATCTGCATGGAGGAAGTACATGGCAATGATGCAACAAGAGTGGATTGTGGTCATTGCTTTTGTAATAACTGTTGGACTGAACATTTCATTGTGAAAATAAACGAGGGTCAAAGTCGGAGAATCAGATGCATGGCCCACAAATGTAATGCGATTTGTGATGAAGCTGTTGTTAGGAATCTAGTTAGCAAAAGGCATCCAGATCTTGCTAATAAATTTGATCGTTTTCTTCTTGAATCATACATTGAGGATAACAAAAGAGTCAAGTGGTGTCCAAGTACTCCTCATTGTGGCAATGCTATACGCGTGGAGGATGATGAGTTTTGTGAAGTAGAATGTTCGTGTGGTCTTCAGTTTTGTTTCAGTTGCTTATCAGAAGCTCACTCACCGTGTTCATGTTTGATGTGGGAACTTTGGATTAAGAAGTGCCGAGATGAATCTGAAACTGTTAACTGGATTACAGTACATACAAAGCCCTGCCCAAAGTGCCATAAACCTGTCGAGAAGAATGGAGGTTGTAACCTTGTCAGCTGCATCTGCGGTCAGGCATTTTGTTGGCTGTGTGGTGGAGCCACGGGTCGAGAGCACACTTGGTCAAGTATTTCTGGTCATAGTTGTGGGCGTTACAAAGAAGAATCAGAACAGAAAGCTGAGCGAGCAAAACGGGATTTATATCGGTATATGCACTATCATAATCGGTACAAAGCTCATACAGATTCTTTTAAGCTGGAAAGCAAATTGAAGGAATCTATACAAGAGAAGATCTCGATATCGGAAGAGAGGGAATCCATGCTCAGAGATTTTAGTTGGGTAAACAATGGACTGTCTAGACTTTTCAGATCAAGGCGGGTTCTATCATACTCTTACCCATTTGCATTCTATATGTTTGGGGATGAGCTATTCAAAGATGAGATGACTGAGGCGGAAAGAGAGATAAAGCAGCATCTATTTGAGGACCAGCAACAGCAACTTGAGGCAAATGTTGAGAAGCTCTCCAAGTTTTTGGAGGAGCCCTTTGATCAATATACTAAAGATAAGGTAATGGAGATACGGATGCAAGTTATCAATCTGTCGGTTATCACCGATACCCTCTGCAAGAAGATGTATGACTGTATTGAGAATGATCTTCTGGGTTCTCTTGAACTGGGTATCCACAATATTGCTCCTTACAAGTCAAAGGGCATCGAGAAGGCACTGGAGCTTTCTGCTTGTTGGAACAGCAAAGCAAATACTTCAGACAAATATCCACCATCAGACTGTGGTACAAGTGGAGGATTGTCGCAATGCGAACGACTGACTAGCTTGAATTCTGAGGAGAACGGATGCTCTTCTAGGAAACGTGCCAGAGCAGAAGTTGTTACTGGCAACTTTTTTGATCTTAACTTGCCTGCTGAGGTTGTTGATAGAAACTGA 1770 42.88 MDDCISSDEDYYDSDRDSLHGLENEDSEIQWVPKGPATKVITKESLLAAQKEDMRRVMDLLSLREYHARTLLIHYRWDVEKLFAVLVEKGKSHLFATAGVTMIEDRSNSSSEPSSMVMCDICMEEVHGNDATRVDCGHCFCNNCWTEHFIVKINEGQSRRIRCMAHKCNAICDEAVVRNLVSKRHPDLANKFDRFLLESYIEDNKRVKWCPSTPHCGNAIRVEDDEFCEVECSCGLQFCFSCLSEAHSPCSCLMWELWIKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTWSSISGHSCGRYKEESEQKAERAKRDLYRYMHYHNRYKAHTDSFKLESKLKESIQEKISISEERESMLRDFSWVNNGLSRLFRSRRVLSYSYPFAFYMFGDELFKDEMTEAEREIKQHLFEDQQQQLEANVEKLSKFLEEPFDQYTKDKVMEIRMQVINLSVITDTLCKKMYDCIENDLLGSLELGIHNIAPYKSKGIEKALELSACWNSKANTSDKYPPSDCGTSGGLSQCERLTSLNSEENGCSSRKRARAEVVTGNFFDLNLPAEVVDRN 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6150736 6155187 - CrPI670011_01g006700.1 Cre01g0670 488215

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g0670 589 CDD BRcat_RBR_ANKIB1 197 261 - -
Cre01g0670 589 SUPERFAMILY RING/U-box 114 202 - -
Cre01g0670 589 CDD RING-HC_RBR_TRIAD1 117 170 - -
Cre01g0670 589 CDD Rcat_RBR_ARI1-like 273 326 - -
Cre01g0670 589 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 60 360 IPR031127 GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER)
Cre01g0670 589 FunFam RBR-type E3 ubiquitin transferase 113 204 - -
Cre01g0670 589 SUPERFAMILY RING/U-box 260 325 - -
Cre01g0670 589 Pfam Ariadne domain 329 589 IPR045840 -
Cre01g0670 589 SUPERFAMILY RING/U-box 191 259 - -
Cre01g0670 589 Pfam IBR domain 272 314 IPR054694 -
Cre01g0670 589 ProSiteProfiles Zinc finger RING-type profile. 119 167 IPR001841 -
Cre01g0670 589 SMART ibrneu5 190 252 IPR002867 GO:0008270(InterPro)
Cre01g0670 589 SMART ibrneu5 260 325 IPR002867 GO:0008270(InterPro)
Cre01g0670 589 Pfam IBR domain, a half RING-finger domain 190 252 IPR002867 GO:0008270(InterPro)
Cre01g0670 589 ProSiteProfiles TRIAD supradomain profile. 115 329 IPR044066 -
Cre01g0670 589 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 204 IPR013083 -
Cre01g0670 589 FunFam RBR-type E3 ubiquitin transferase 248 496 - -
Cre01g0670 589 Pfam E3 ubiquitin-protein ligase ARIH1, UBA-like domain 49 83 IPR048962 -
Cre01g0670 589 Gene3D - 248 496 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g0670 K11968 - - csv:101205066 1166.37
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0670 Cre-Chr1:6150736 Cre08g0424 Cre-Chr8:14396679 1.30E-49 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre01g0670 . 164 589 ARIADNE family AT4G34370 72.4 6.6e-184 640.6
Cre01g0670 . 58 542 ARIADNE family AT2G16090 77.2 1.5e-224 775.8
Cre01g0670 . 38 543 ARIADNE family AT3G27710 62.0 3.7e-184 641.7
Cre01g0670 . 44 522 ARIADNE family AT3G27720 54.5 5.9e-144 508.1
Cre08g0424 . 61 535 ARIADNE family AT1G05890 73.7 2.0e-218 755.7
Cre11g1362 . 5 261 ARIADNE family AT1G05890 73.9 7.2e-112 401.7
Cre08g0424 . 57 589 ARIADNE family AT1G65430 72.2 3.5e-241 831.2
Cre11g1362 . 5 313 ARIADNE family AT1G65430 74.4 3.7e-134 475.7
Cre11g1358 . 37 173 ARIADNE family AT1G65430 65.0 2.2e-46 184.1
Cre08g0424 . 58 454 ARIADNE family AT2G31780 58.4 5.3e-144 508.1
Cre11g1362 . 13 176 ARIADNE family AT2G31780 56.1 1.5e-50 197.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003767 0 4 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 5 2 46