Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g0677 ATGCCGACCGCCCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCCCCTTCCTCCTCCTCCACCGCCGTCAATTTCCCTCCCCCCGCCTCCTTGCAGTCGGCAAAGCTCCCCGTCGATTTCAGTCCCCCTCTAATCGCCATGGTTGTCGTCATCGCTACCGCCTTCCTCATCGTCACTTACTCTCGCCTCATCTCCCGCCATCTCATCCCTCCCATTCTCCACCTCCTCCGTCTCCACCGCCGTCGCTGGCGCCGGTGGCGGCGCCGACGTCGACGCGCCCGATCTTACCTTCCGTCTTCCTCTGGAGGCGACCTGGATTCACTCCCTTACGATTCGCCTTTCTTCGAACCTACAGATGGCTTCCACGTTTTCTCTCCGTACGGTCTCGACGAATCCGTAATCAAGACGATTCCGCTTTCCGTTTACACTGCCAAAAGCCGTGACCGTGAGTGCGCCGTTTGTCTTCTCGAGTTTGAAGACGATGATTACGTCAGAACACTTCCGATTTGTTCTCACGCGTTTCACGTTGATTGTATAGATGTATGGCTTAGGTCACACGCGAACTGTCCTCTTTGTCGCGCGGTGGTTTTCAGGCCGGAATCTCCATTTACACCGGTTATGGCGGCTAGAATCCGGCCAAGCCTCGATGATACGATCTTACGGAGTATCGTATTAGAGCCGCTCGTGGAAGGTCCTATTCCTAATCTAGATTCTTATCACGCGACGGAATCGGAAATTACTCCTTGCGTTGATGAACCACGGAATAGCAATTCCGTGGAGGATCAAATGAACGGACAAGATTTCTTGCTGAAGCGATCGTATTCATTTGGATTCGAACGGAGCTTAGCGTCGGAGAGAATGATTCTGGAACCAGCGACCACGTCTCCTTGGAGGTACCGTCGTGGAAGCTTCTGGAGCAAACGTCCGTCGCCGTTCGGATCTCTACCGAAGGCAAGAGTGTTTTCGTTCCGATACTACAGAGGAATGAAGTCGCCGTTCTTCAGACGAAGAGGAGGATTCTTTCCGCTATCGGAATCAAGCTGGAGATTCTCCAACGGTGTAGGCGGAGGCTCATCGAGACGGAGTAAGTCAATGACGAGTCCGATGTTTCTCCGATCGTCGGTAACCGGCGGAGGAACAGCGGCGTTCTCGTCGAGCCGGTTGAGATGCGGAGATCCCGAGGCGTTATTATCACCGGAGAGATTCAACCAAAGATGA 1221 53.89 MPTAPSPSPSPSPSPSPSSSSTAVNFPPPASLQSAKLPVDFSPPLIAMVVVIATAFLIVTYSRLISRHLIPPILHLLRLHRRRWRRWRRRRRRARSYLPSSSGGDLDSLPYDSPFFEPTDGFHVFSPYGLDESVIKTIPLSVYTAKSRDRECAVCLLEFEDDDYVRTLPICSHAFHVDCIDVWLRSHANCPLCRAVVFRPESPFTPVMAARIRPSLDDTILRSIVLEPLVEGPIPNLDSYHATESEITPCVDEPRNSNSVEDQMNGQDFLLKRSYSFGFERSLASERMILEPATTSPWRYRRGSFWSKRPSPFGSLPKARVFSFRYYRGMKSPFFRRRGGFFPLSESSWRFSNGVGGGSSRRSKSMTSPMFLRSSVTGGGTAAFSSSRLRCGDPEALLSPERFNQR 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6230429 6231649 + CrPI670011_01g006770.1 Cre01g0677 488222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g0677 406 SMART ring_2 152 193 IPR001841 -
Cre01g0677 406 CDD RING-H2_EL5-like 151 194 - -
Cre01g0677 406 SUPERFAMILY RING/U-box 148 200 - -
Cre01g0677 406 MobiDBLite consensus disorder prediction 353 384 - -
Cre01g0677 406 MobiDBLite consensus disorder prediction 1 27 - -
Cre01g0677 406 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 198 IPR013083 -
Cre01g0677 406 MobiDBLite consensus disorder prediction 1 16 - -
Cre01g0677 406 FunFam RING-H2 finger protein ATL65 123 198 - -
Cre01g0677 406 ProSiteProfiles Zinc finger RING-type profile. 152 194 IPR001841 -
Cre01g0677 406 Pfam Ring finger domain 151 194 IPR001841 -
Cre01g0677 406 PANTHER RING-H2 FINGER PROTEIN ATL16 17 217 IPR044600 GO:0016567(InterPro)|GO:0016740(InterPro)
Cre01g0677 406 MobiDBLite consensus disorder prediction 353 387 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0677 Cre-Chr1:6230429 Cre05g0530 Cre-Chr5:4725837 2.00E-20 dispersed
Cre08g1229 Cre-Chr8:25500876 Cre01g0677 Cre-Chr1:6230429 6.20E-09 transposed
Cre01g0677 Cre-Chr1:6230429 Cre02g2253 Cre-Chr2:36130632 8.30E-19 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g0677 - - - 0.0