Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre01g0677 | ATGCCGACCGCCCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCCCCTTCCTCCTCCTCCACCGCCGTCAATTTCCCTCCCCCCGCCTCCTTGCAGTCGGCAAAGCTCCCCGTCGATTTCAGTCCCCCTCTAATCGCCATGGTTGTCGTCATCGCTACCGCCTTCCTCATCGTCACTTACTCTCGCCTCATCTCCCGCCATCTCATCCCTCCCATTCTCCACCTCCTCCGTCTCCACCGCCGTCGCTGGCGCCGGTGGCGGCGCCGACGTCGACGCGCCCGATCTTACCTTCCGTCTTCCTCTGGAGGCGACCTGGATTCACTCCCTTACGATTCGCCTTTCTTCGAACCTACAGATGGCTTCCACGTTTTCTCTCCGTACGGTCTCGACGAATCCGTAATCAAGACGATTCCGCTTTCCGTTTACACTGCCAAAAGCCGTGACCGTGAGTGCGCCGTTTGTCTTCTCGAGTTTGAAGACGATGATTACGTCAGAACACTTCCGATTTGTTCTCACGCGTTTCACGTTGATTGTATAGATGTATGGCTTAGGTCACACGCGAACTGTCCTCTTTGTCGCGCGGTGGTTTTCAGGCCGGAATCTCCATTTACACCGGTTATGGCGGCTAGAATCCGGCCAAGCCTCGATGATACGATCTTACGGAGTATCGTATTAGAGCCGCTCGTGGAAGGTCCTATTCCTAATCTAGATTCTTATCACGCGACGGAATCGGAAATTACTCCTTGCGTTGATGAACCACGGAATAGCAATTCCGTGGAGGATCAAATGAACGGACAAGATTTCTTGCTGAAGCGATCGTATTCATTTGGATTCGAACGGAGCTTAGCGTCGGAGAGAATGATTCTGGAACCAGCGACCACGTCTCCTTGGAGGTACCGTCGTGGAAGCTTCTGGAGCAAACGTCCGTCGCCGTTCGGATCTCTACCGAAGGCAAGAGTGTTTTCGTTCCGATACTACAGAGGAATGAAGTCGCCGTTCTTCAGACGAAGAGGAGGATTCTTTCCGCTATCGGAATCAAGCTGGAGATTCTCCAACGGTGTAGGCGGAGGCTCATCGAGACGGAGTAAGTCAATGACGAGTCCGATGTTTCTCCGATCGTCGGTAACCGGCGGAGGAACAGCGGCGTTCTCGTCGAGCCGGTTGAGATGCGGAGATCCCGAGGCGTTATTATCACCGGAGAGATTCAACCAAAGATGA | 1221 | 53.89 | MPTAPSPSPSPSPSPSPSSSSTAVNFPPPASLQSAKLPVDFSPPLIAMVVVIATAFLIVTYSRLISRHLIPPILHLLRLHRRRWRRWRRRRRRARSYLPSSSGGDLDSLPYDSPFFEPTDGFHVFSPYGLDESVIKTIPLSVYTAKSRDRECAVCLLEFEDDDYVRTLPICSHAFHVDCIDVWLRSHANCPLCRAVVFRPESPFTPVMAARIRPSLDDTILRSIVLEPLVEGPIPNLDSYHATESEITPCVDEPRNSNSVEDQMNGQDFLLKRSYSFGFERSLASERMILEPATTSPWRYRRGSFWSKRPSPFGSLPKARVFSFRYYRGMKSPFFRRRGGFFPLSESSWRFSNGVGGGSSRRSKSMTSPMFLRSSVTGGGTAAFSSSRLRCGDPEALLSPERFNQR | 406 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 6230429 | 6231649 | + | CrPI670011_01g006770.1 | Cre01g0677 | 488222 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre01g0677 | 406 | SMART | ring_2 | 152 | 193 | IPR001841 | - | |
Cre01g0677 | 406 | CDD | RING-H2_EL5-like | 151 | 194 | - | - | |
Cre01g0677 | 406 | SUPERFAMILY | RING/U-box | 148 | 200 | - | - | |
Cre01g0677 | 406 | MobiDBLite | consensus disorder prediction | 353 | 384 | - | - | |
Cre01g0677 | 406 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Cre01g0677 | 406 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 123 | 198 | IPR013083 | - | |
Cre01g0677 | 406 | MobiDBLite | consensus disorder prediction | 1 | 16 | - | - | |
Cre01g0677 | 406 | FunFam | RING-H2 finger protein ATL65 | 123 | 198 | - | - | |
Cre01g0677 | 406 | ProSiteProfiles | Zinc finger RING-type profile. | 152 | 194 | IPR001841 | - | |
Cre01g0677 | 406 | Pfam | Ring finger domain | 151 | 194 | IPR001841 | - | |
Cre01g0677 | 406 | PANTHER | RING-H2 FINGER PROTEIN ATL16 | 17 | 217 | IPR044600 | GO:0016567(InterPro)|GO:0016740(InterPro) | |
Cre01g0677 | 406 | MobiDBLite | consensus disorder prediction | 353 | 387 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre01g0677 | Cre-Chr1:6230429 | Cre05g0530 | Cre-Chr5:4725837 | 2.00E-20 | dispersed | |
Cre08g1229 | Cre-Chr8:25500876 | Cre01g0677 | Cre-Chr1:6230429 | 6.20E-09 | transposed | |
Cre01g0677 | Cre-Chr1:6230429 | Cre02g2253 | Cre-Chr2:36130632 | 8.30E-19 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre01g0677 | - | - | - | 0.0 |