Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g0684 ATGGGCCAGCCCCTTCCATCGGCTGGTTCAACTTTTAGGTCAAAAGAAGAATCAGTGGAAGAAGGGCAAGTAGATCTGAAAGCTCATACAACAGAGCCTCATACGGCGGAGATTGAGGGAGAGAAATCCGGCGACGGTCGGCCGATTCTTTCCGAACGGGCGGTTTCAAAAGGAAAATGCCGCGCCCTCATTTTCACAAGCTTGTTCTCACCTCAACTATCCAAGCTAGGAAATTGGGAAGAAGGAAAAAGTTATCGGGATATACTCGATTTTCTTGTTGATTTACTTACTTCTCTGTTTATTAGTTTTGATCAATCGAAGAAGTTGTTTAGTTGTACGAGTGCTGAATTAGCCCAGTTTAGCCGTTGGAGCATGGCAAAAGCAAACAAACATTGTATTCCTTCTGTTGTATTGTTATTCTCGCTGTACATGGTGTTAGCTTTTGTTATTCTTTCTGCACTTACGGCTTCATTTGATTGTTCTTATAATGTGGTCTATGCTATGATTTGTTTTTGCCTGAGAATCCCAGAAACTTTTGTCAGGATGATCAGGGATGAGCTTTCAGCAGTTGCAACCCTTACTGTTCCTGATGGCCATGTTTGGCGTGTGGGTTTGAGAAAAGCCGATAACAAATTTTGGTTTGAAGATGGATGGCAAGGATTTCTTGAGCATTACTCCATACGGGTTGGGTATTTATTAGTATTCAGATATGAGGGAAACTCAGCATTCTGTGTTTTTATCTTTAATCTTAATGCTTCTGAAATAAACTACCAATCAGCTGCTCTCAGTAGTAATCAAAGGAATAATTACAGCATTCAAAACCGAATCTTTGAAGAAATGGAGGATTATGACATTCCTGAAGCCATTCCCTCCAATCAGTCCATGAATTCCGGTTCTTTGCGAAATAAGCTATTTGGTGATGAATGGAATCTGCACCAATCAAAATCTGCAAGTACGTTGCAAGCCGAGTATTTATCTACTCGAGATATTGGGGTTCAGTTTAGTGCTGTGGAGGTTAAAAAATCTGCAGATGAGGTGAGATTCCAGAATTTGGGTGATGATGCAGCACACAGAATTAAAAAGAGTGGAGGGAAAAAGCGGAAAATTGAGTCTAGCGAGCACCATCCATCTGCTCATAATAGTGAAGATTTAGGAGATATTCGCTTTAGATTTTATGAAAGTGCTTCTGCTAGAAAGAGAACTGTGACAGCAGAAGAAAGAGAAAGAGCTATCAACGCTGCAAAAGCTTTTGAGCCCGGTAATCCTTTCTGCAGAGTTGTCTTGCGACCATCCTATCTATACAGAGGTTGCATAATGTATTTGCCATCTTGCTTTGCTGAAAAGAATCTAAGTGGGGTTTCAGGATTCATCAAACTTCAGACACCTGACGGGAGACAGTGGCCAGTCCGATGTCTTTATAAAGTTGGTAGAGCGAAGTTAAGTCAGGGATGGTATGAGTTCTGCCTGGAAAATAATCTAGGGGAGGGTGACGTTTGTGTGTTTGAGCTTCTTAGAATGAGAGAAATTGTGCTCAAAGTTACCATGTTTCGTGTCATTGAAGAAGGCGGACGAATGGCAACCCCCAATCCTGCTAGCATGATGAATCCACCTCCGCTGCGAAGTGTTAGCCACATTAAACTGATCAGAAATTAA 1653 41.62 MGQPLPSAGSTFRSKEESVEEGQVDLKAHTTEPHTAEIEGEKSGDGRPILSERAVSKGKCRALIFTSLFSPQLSKLGNWEEGKSYRDILDFLVDLLTSLFISFDQSKKLFSCTSAELAQFSRWSMAKANKHCIPSVVLLFSLYMVLAFVILSALTASFDCSYNVVYAMICFCLRIPETFVRMIRDELSAVATLTVPDGHVWRVGLRKADNKFWFEDGWQGFLEHYSIRVGYLLVFRYEGNSAFCVFIFNLNASEINYQSAALSSNQRNNYSIQNRIFEEMEDYDIPEAIPSNQSMNSGSLRNKLFGDEWNLHQSKSASTLQAEYLSTRDIGVQFSAVEVKKSADEVRFQNLGDDAAHRIKKSGGKKRKIESSEHHPSAHNSEDLGDIRFRFYESASARKRTVTAEERERAINAAKAFEPGNPFCRVVLRPSYLYRGCIMYLPSCFAEKNLSGVSGFIKLQTPDGRQWPVRCLYKVGRAKLSQGWYEFCLENNLGEGDVCVFELLRMREIVLKVTMFRVIEEGGRMATPNPASMMNPPPLRSVSHIKLIRN 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6374136 6377443 - CrPI670011_01g006840.1 Cre01g0684 488229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g0684 550 SUPERFAMILY DNA-binding pseudobarrel domain 171 251 IPR015300 -
Cre01g0684 550 MobiDBLite consensus disorder prediction 1 48 - -
Cre01g0684 550 PANTHER B3 DOMAIN-CONTAINING 159 504 IPR050655 -
Cre01g0684 550 ProSiteProfiles B3 DNA-binding domain profile. 424 519 IPR003340 GO:0003677(InterPro)
Cre01g0684 550 Pfam B3 DNA binding domain 426 517 IPR003340 GO:0003677(InterPro)
Cre01g0684 550 Pfam B3 DNA binding domain 172 249 IPR003340 GO:0003677(InterPro)
Cre01g0684 550 Gene3D - 401 521 IPR015300 -
Cre01g0684 550 MobiDBLite consensus disorder prediction 14 48 - -
Cre01g0684 550 MobiDBLite consensus disorder prediction 357 382 - -
Cre01g0684 550 CDD B3_DNA 422 517 IPR003340 GO:0003677(InterPro)
Cre01g0684 550 SMART B3_2 160 251 IPR003340 GO:0003677(InterPro)
Cre01g0684 550 SMART B3_2 424 519 IPR003340 GO:0003677(InterPro)
Cre01g0684 550 Gene3D - 164 252 IPR015300 -
Cre01g0684 550 ProSiteProfiles B3 DNA-binding domain profile. 158 251 IPR003340 GO:0003677(InterPro)
Cre01g0684 550 SUPERFAMILY DNA-binding pseudobarrel domain 419 518 IPR015300 -
Cre01g0684 550 CDD B3_DNA 166 249 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0684 Cre-Chr1:6374136 Cre02g1619 Cre-Chr2:28924558 1.10E-26 dispersed
Cre01g0683 Cre-Chr1:6355156 Cre01g0684 Cre-Chr1:6374136 4.30E-42 tandem
Cre07g2061 Cre-Chr7:36194489 Cre01g0684 Cre-Chr1:6374136 6.90E-25 transposed
Cre01g0684 Cre-Chr1:6374136 Cre04g1276 Cre-Chr4:31521590 3.20E-21 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52999 PF02362 B3 9.10E-18 CL0405 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g0684 - - - 0.0