Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g0696 ATGGCGCAACCAAATTCGGAAGAGAAAGTGAGTGAGAATCCTGAAATGGAGGTCAACAAAGAAGCTATCAATGGCGATGGCGATGATGGAAGTAGTAACAGCAGCATTGCTAATTTGGCCTTCAGATTCAATGCTCAAGCGCCTGAGTTTTTCCCTAGATCGCAAACCCAGATGCCTGTTACTGGCTATTTTCATCCCTATTTCCATTTTCTTGGTGGGGGTCCTGCTACTTCAGATTGGTTCTTTATTGGGGATCAAGAACCAGCCTATTTGATCCCCAATCCCAACATTCCGCTCCCTAATTTCTCTAAGACTGCCCGTTCTGAAGAAATTCAGCAAAAAATCATCAAACAGGTAGAATATCAGCTCAGTGACATGAGTCTTCTTGCAAACGAGACTCTTGCAAAACACATTAGTAAAGATCCTGATGGTTATGTTCCGATTTCTATTCTTTCGTCGACCAAAAAAGTGAAGTCCCTCTCAACCAACAACAATTTCATAGTTCAAGCACTCCGCTCCTCTTCAAGGCTTGTTGTCAGTGCTGATGGGAAGAAAGTTAGACGTAAGCATCCATTCACAGAGAAGGATAAAGAAGAATTGCTGGCCCGCTCAGTTGTTGTTGAGAATTTGCCCGAAAATCACTCGCATCACAACCTGGAGAAAATATTTAGTGTGATCGGAAGTGTGAAGACTATCCGAATCTGCCATCCCCCAGAATCGAATCCCTGCTGCTCTAAAGGTGAATTGTTTGTCAGTAACAAGCTTCATGCACTTGTGGAGTTTGAGACAGGAGAGTTGGCTGAAAGAGCGGTGGAGCAGTTAAATGATGAGAGAAACTGGAGGAAAGGACTCCGAGTAAGGTCACTGGTGAGACGATCGCCGAAATCTGTTCTGAAGACTCGAAAATCAGAATTTGATAGCATTTTGGATGATGATGATTCACCATCTCCTGTATCCGTTGAAGAGTCCTCTCTGCCGAATATCAATGACCTGATTATCGATTGCAATTCTGAAGAGAACTCTACATCATCTAAGAAGAGCTGGGGTCGAGGACGTGGGAAGGGGCGTGGACGAATTCATAGCCATCTCGATCGTAGCTATAGCTTGCCAGTTACGTCGTCTCTGCAGACGAGTGGCCAAGTTTTGCGTGAAGCATCTTCCAAACTCACTTCAAAGAGTCCAAGAATGCCTGATGGGACTAAAGGTTTCACCATGGGAAGAGGCAAGCCATTAAGCTCTAAACCATTATTCAATAGGCTTGTTGACTGA 1269 44.37 MAQPNSEEKVSENPEMEVNKEAINGDGDDGSSNSSIANLAFRFNAQAPEFFPRSQTQMPVTGYFHPYFHFLGGGPATSDWFFIGDQEPAYLIPNPNIPLPNFSKTARSEEIQQKIIKQVEYQLSDMSLLANETLAKHISKDPDGYVPISILSSTKKVKSLSTNNNFIVQALRSSSRLVVSADGKKVRRKHPFTEKDKEELLARSVVVENLPENHSHHNLEKIFSVIGSVKTIRICHPPESNPCCSKGELFVSNKLHALVEFETGELAERAVEQLNDERNWRKGLRVRSLVRRSPKSVLKTRKSEFDSILDDDDSPSPVSVEESSLPNINDLIIDCNSEENSTSSKKSWGRGRGKGRGRIHSHLDRSYSLPVTSSLQTSGQVLREASSKLTSKSPRMPDGTKGFTMGRGKPLSSKPLFNRLVD 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6612576 6615571 + CrPI670011_01g006960.1 Cre01g0696 488241

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g0696 422 SMART rrm1_1 204 287 IPR000504 GO:0003723(InterPro)
Cre01g0696 422 Gene3D - 195 296 IPR012677 -
Cre01g0696 422 SUPERFAMILY RNA-binding domain, RBD 191 295 IPR035979 GO:0003676(InterPro)
Cre01g0696 422 Pfam RNA recognition motif 205 276 IPR000504 GO:0003723(InterPro)
Cre01g0696 422 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 203 293 IPR000504 GO:0003723(InterPro)
Cre01g0696 422 PRINTS Lupus La protein signature 175 188 IPR002344 GO:0003723(InterPro)|GO:0005634(InterPro)|GO:0006396(InterPro)|GO:1990904(InterPro)
Cre01g0696 422 PRINTS Lupus La protein signature 118 135 IPR002344 GO:0003723(InterPro)|GO:0005634(InterPro)|GO:0006396(InterPro)|GO:1990904(InterPro)
Cre01g0696 422 PRINTS Lupus La protein signature 197 213 IPR002344 GO:0003723(InterPro)|GO:0005634(InterPro)|GO:0006396(InterPro)|GO:1990904(InterPro)
Cre01g0696 422 PRINTS Lupus La protein signature 144 159 IPR002344 GO:0003723(InterPro)|GO:0005634(InterPro)|GO:0006396(InterPro)|GO:1990904(InterPro)
Cre01g0696 422 MobiDBLite consensus disorder prediction 10 24 - -
Cre01g0696 422 Gene3D - 107 194 IPR036388 -
Cre01g0696 422 MobiDBLite consensus disorder prediction 366 394 - -
Cre01g0696 422 MobiDBLite consensus disorder prediction 336 422 - -
Cre01g0696 422 PANTHER LUPUS LA PROTEIN-RELATED 48 408 IPR045180 GO:0003723(PANTHER)|GO:0003729(PANTHER)|GO:0005634(PANTHER)|GO:0005844(PANTHER)
Cre01g0696 422 SMART la 109 189 IPR006630 -
Cre01g0696 422 ProSiteProfiles La-type HTH domain profile. 105 196 IPR006630 -
Cre01g0696 422 SUPERFAMILY Winged helix DNA-binding domain 106 192 IPR036390 -
Cre01g0696 422 MobiDBLite consensus disorder prediction 1 35 - -
Cre01g0696 422 Pfam La domain 115 173 IPR006630 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g0696 K15191 - - csv:101217948 682.559
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0696 Cre-Chr1:6612576 Cre09g1352 Cre-Chr9:20950818 1.90E-50 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g467 . . . . . Bpe12g00064 . . . . Cma02g00438 . Car02g00296 . . . . . . . . . . . . . . . . . . Cone12ag1111 Cone8ag1153 . . Lsi10g00312 . Chy11g00436 . . Blo13g00567 Bda15g00027 . . . . . Sed01g0334 Cmo02g00443 . . . . . . Cpe05g01224 Bhi10g02075 Tan05g1392 Cmetu11g0139 . . . . Cla09g01715 Cam09g1809 Cec09g1871 Cco09g1964 . . Cre01g0696 . Csa02g01201 . Cme11g00508
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008129 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 0 1 1 1 1 2 2 1 35