Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g0704 ATGGCCCAGCCTTCCAACGGTGCTGATCTCAATCCCCAGGCCCCTCACCCTCACCACCAATGGTTTCAACAACAACAACAGTATCAGCAGCAATGGATGGCGATGCAGTACCCTGCCGCCGCCATGGCCATGATGCATCAACAGCAGATGATGATGTATCCTCCTCAGCATTACATGGCGTATTCTCACCATCCTTATCAACAGCAGCAACAGCAACAACAGCAGCCGTCGCAGCAGCAGCAGCAGCAGCAGCAAGCTCAGTCGCAGCGACCTCGCAGACAGGGGTCAACGGACGAGGTTAAAACGCTTTGGATTGGTGACCTTCAGCCTTGGATGGACGAGACCTACCTCAATAATTGTTTCGCTCACACCGGCGAGGTTTTCTCTGTTAAGGTTATATGCAATAAGCAAACTGGTCAATCTGAGGGCTATGGATTTGTTGAGTTCTATTCGCATGCAACGGCCGATAAAGTTTTGCAGAATTATAATGGTGCTATAATGCCTAACACAGAGCTGCCTTTCCGTCTCAATTGGGCAACTTTTAGTGCAAATGATAGGCGACCAGACACTGGTTCTGACCTATCGATATTTGTTGGTGATTTGGCTGCCGATGTGACTGATGCTATGCTGCAAGAAACTTTTTCTAGTAGATACACATCTGTTAAAGGAGCAAAGGTGGTTATTGATTCAAATTCAGGTCGTTCAAAAGGTTATGGCTTTGTCAGGTTTGGTGATGAAAATGAAAGGACAAGGGCTATGACTGAAATGAATGGGATTTATTGTTCAAGTAGACCCATGCGCATTGGTGTTGCAACACCAAAGAAGGCATCTGGATATCAACAAGGTTATTCTTCACAAGCTTTGGTACTGGCTGGTGGACATGCAAATGGCATGGCCGTTCAGGGTTCACAATCAGATGGCGAGTCAAACAACACGACTATATTTGTTGGCGGCCTTGATTCTGATGTTAGTGATGAAGATCTCAAGCAACCTTTCTCAAAATTTGGTGATGTTGTATCTGTGAAAATTCCTATTGGAAAAGGATGTGGATTTGTGCAATTTGCTAACAGAAAGAATGCTGAGGATGCAATACAGGGACTGAATGGAACAGTTATAGGGAAGCAAACTGTTCGTCTTTCTTGGGGCCGAAGTACAGGGAACAAGCAGTGGAGAGGTGATTCTAATAACCAATGGAATGGGGGACGTTATGGCGGGCAAGGCTACGGTGGATATGGTGGTGGCTACTACTCCGTACCACAGCATCAGGACACAAACATGCATGCCACAGCTGCTGCAGTTAATGGATCATCTTGA 1314 46.35 MAQPSNGADLNPQAPHPHHQWFQQQQQYQQQWMAMQYPAAAMAMMHQQQMMMYPPQHYMAYSHHPYQQQQQQQQQPSQQQQQQQQAQSQRPRRQGSTDEVKTLWIGDLQPWMDETYLNNCFAHTGEVFSVKVICNKQTGQSEGYGFVEFYSHATADKVLQNYNGAIMPNTELPFRLNWATFSANDRRPDTGSDLSIFVGDLAADVTDAMLQETFSSRYTSVKGAKVVIDSNSGRSKGYGFVRFGDENERTRAMTEMNGIYCSSRPMRIGVATPKKASGYQQGYSSQALVLAGGHANGMAVQGSQSDGESNNTTIFVGGLDSDVSDEDLKQPFSKFGDVVSVKIPIGKGCGFVQFANRKNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQGYGGYGGGYYSVPQHQDTNMHATAAAVNGSS 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6706971 6717003 - CrPI670011_01g007040.1 Cre01g0704 488249

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g0704 437 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 101 181 IPR000504 GO:0003723(InterPro)
Cre01g0704 437 MobiDBLite consensus disorder prediction 64 93 - -
Cre01g0704 437 Gene3D - 193 270 IPR012677 -
Cre01g0704 437 FunFam Polyadenylate-binding protein RBP47B 100 180 - -
Cre01g0704 437 Pfam RNA recognition motif 103 172 IPR000504 GO:0003723(InterPro)
Cre01g0704 437 Pfam RNA recognition motif 196 266 IPR000504 GO:0003723(InterPro)
Cre01g0704 437 Pfam RNA recognition motif 314 377 IPR000504 GO:0003723(InterPro)
Cre01g0704 437 FunFam Polyadenylate-binding protein RBP47 294 415 - -
Cre01g0704 437 CDD RRM1_SECp43_like 102 182 - -
Cre01g0704 437 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 194 273 IPR000504 GO:0003723(InterPro)
Cre01g0704 437 SMART rrm1_1 102 175 IPR000504 GO:0003723(InterPro)
Cre01g0704 437 SMART rrm1_1 195 269 IPR000504 GO:0003723(InterPro)
Cre01g0704 437 SMART rrm1_1 313 380 IPR000504 GO:0003723(InterPro)
Cre01g0704 437 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 54 385 IPR050825 GO:0003729(PANTHER)|GO:0003729(InterPro)|GO:0005829(PANTHER)
Cre01g0704 437 CDD RRM2_SECp43_like 193 272 - -
Cre01g0704 437 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 312 384 IPR000504 GO:0003723(InterPro)
Cre01g0704 437 SUPERFAMILY RNA-binding domain, RBD 177 287 IPR035979 GO:0003676(InterPro)
Cre01g0704 437 SUPERFAMILY RNA-binding domain, RBD 67 185 IPR035979 GO:0003676(InterPro)
Cre01g0704 437 SUPERFAMILY RNA-binding domain, RBD 304 414 IPR035979 GO:0003676(InterPro)
Cre01g0704 437 Gene3D - 60 191 IPR012677 -
Cre01g0704 437 MobiDBLite consensus disorder prediction 1 25 - -
Cre01g0704 437 MobiDBLite consensus disorder prediction 64 100 - -
Cre01g0704 437 Gene3D - 294 421 IPR012677 -
Cre01g0704 437 FunFam Polyadenylate-binding protein RBP47B 182 284 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g0704 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0704 Cre-Chr1:6706971 Cre05g2153 Cre-Chr5:33316734 3.50E-124 dispersed
Cre01g0704 Cre-Chr1:6706971 Cre05g2152 Cre-Chr5:33309407 1.40E-125 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g447 Blo02g00819 . Bda06g01045 . . . . Bma12g00469 . . Cma02g00443 Cma20g00892 Car02g00300 Car20g00769 . . . . . . . . . . . . . . . . . Cone6ag0064 Cone9ag0078 Cone14ag1139 Cone15ag1157 Lsi10g00304 . Chy11g00443 . . . . . . . . . . Cmo02g00452 Cmo20g00899 . . . . . Cpe05g01219 . . . . . . . Cla09g01707 Cam09g1803 Cec09g1863 Cco09g1956 . . Cre01g0704 . Csa02g01195 . Cme11g00517
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000461 5 3 1 4 1 5 5 5 5 4 4 4 5 3 3 4 5 5 5 5 3 3 3 3 3 4 3 6 6 2 117