Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g0706 ATGGATTCCCAGCAAGAGGAAATCGAGTTCGAATTCCTCCCCGTCTTCCGCGTCTTCAAAAATGGCCGCGTCCACAGACTCCTTCTCACCGATCGCATTCCCCCGTCCACCGATCAACTCACCGGAGTTCAATCCAAAGACTTCCTCATCGATCCAAAAACCGGAGTCTCCGTCCGCCTCTACCTCCCCAAACTTTCAGATTCCACCAAAAAGCTTCCGCTTCTAATCTACATCCATGGCGGCGCTTTCTCCGTCGGCTCCCCTGCCTCTCCAATGTTCCACAACCATCTCATCTCCCTGACCGCCCAAGCAAACGCGGTGACTGTGTCGGTAGACTACCGCTTGGCACCGGAGAATAATCTGCCGGCGGCATATGAGGACGCTTGGACGGCGGTGGAATGGGCGGCGTCGCACTCGAGTCTCAGCGGCCCTGAGATTTGGTTGAACCAGCATGCGGATTTTAATCGGGTGTTTGTAGTAGGGGAAAGCGCTGGGGCTAATATTTCGTACAATGTAATGGACCGGGCTACCGAGAATGAAGATGGGGTGAAGGTGAAGGGAATGAAGATAATTGGGCTGGGCCTTGTGCACCCGTATTTCATGATTGACAAGCCCGATAAATTGATAGAGTATATTTTTCCAACGTCAGCGGGTCTGGAGGATCCGAGACTGAACCCGAAAGCCAACCCGAGAGTAGGGAAATTGATCCTTTGA 714 52.94 MDSQQEEIEFEFLPVFRVFKNGRVHRLLLTDRIPPSTDQLTGVQSKDFLIDPKTGVSVRLYLPKLSDSTKKLPLLIYIHGGAFSVGSPASPMFHNHLISLTAQANAVTVSVDYRLAPENNLPAAYEDAWTAVEWAASHSSLSGPEIWLNQHADFNRVFVVGESAGANISYNVMDRATENEDGVKVKGMKIIGLGLVHPYFMIDKPDKLIEYIFPTSAGLEDPRLNPKANPRVGKLIL 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6774166 6774879 + CrPI670011_01g007060.1 Cre01g0706 488251

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g0706 237 SUPERFAMILY alpha/beta-Hydrolases 15 210 IPR029058 -
Cre01g0706 237 Pfam alpha/beta hydrolase fold 75 202 IPR013094 GO:0016787(InterPro)
Cre01g0706 237 Gene3D alpha/beta hydrolase 14 234 IPR029058 -
Cre01g0706 237 PANTHER ARYLACETAMIDE DEACETYLASE 14 226 IPR050466 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g0706 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0706 Cre-Chr1:6774166 Cre08g1513 Cre-Chr8:27863680 7.40E-60 dispersed
Cre01g0705 Cre-Chr1:6747872 Cre01g0706 Cre-Chr1:6774166 7.70E-97 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g444 Blo02g00821 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi10g00303 . . . . . . . . . . . . . . . . . . . Cpe05g01218 Bhi10g02086 . . . Hepe08g1070 . . Cla09g01704 Cam09g1801 Cec09g1862 Cco09g1954 . . Cre01g0706 . Csa02g01193 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001193 1 6 2 2 1 3 2 3 3 1 2 3 2 1 2 2 3 5 2 3 1 4 5 2 3 7 2 2 2 1 78