Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g0782 ATGGCGTCTGCTATTTTAGCAAATCACGAACCCAGTTGGCCAACGAGCAACAAACGCAACGGCAGTGGAGGAGTTGGAGGAGGAGCGTTTATGGCGAGAGTTCCGTTCTCAAACCCTAAATCTAAACCTAATATGAAAAAGAGGAAAACTAATGGTGAAATTAACAACTTCCATCAGATGGGTGAAGAAATGGGCAACGTAACAACTCTATCTCCTTCGGATAACGGATCTTTCATCGATCGTTACAATGGGTCTTCGAACTTCGAGTACAACCAATATGTGAGTTTCAATATAACTTCATGTTCTGGGAGGGATTTGTTTGAGCTGAAGAAACGGTTGCTGGGGGAGCTTGAACAAGTTAGGCGAATCAAAAATCGTATTGAATCTGGGGACATTGGTTCTGGACCTAATTATTTCAAGAAATCTTCCAAGACCAAGGGATTGAACAAGCGGCCGAAGATGCCATCTAATTTTGGCAGAGATTTGCAGGTTACGAATTCCTTTGAAGTTGGGAATCTTATGAAGACTTGCGCTCAAATCTTGAACAAATTGATGAAGCAGAAATATGGGTTGATCTTCAACAAGCCAGTGGATGTGGTTGGGTTGGGTCTTCATGACTATTATGATATTATTAAGCATCCTATGGATCTAGGGACCGTGAAATCTAAACTGGCTAAGAATTTATACGACTCGCCTTTGGATTTTGCTGATGATGTTAGGCTAACTTTTAACAATGCCATGATGTACAATCCCAAGGGTCACGAAGTTCATGTATTGGCTGAACAGTGGTTAGTGAAATTTGAGGAAATGTTTCTTCCTGTTAGTCTGAAGCTGGGTGCACTGAAGCAGCCAGATCCGTATGAAGAGGAATTGCAAGCCAGTTCTTGGAATCGTGTTGAGGAGGTGGAGAAGGTGAATTTCAACTCTAATGGGAACAAATCGGAAGAAGTAAGAGTGCCATCGAGCTCATCAAAGCCGCCTTCAGTTCAATCACCAGTGAGAACCCCATCACCGGTGAGGGTACCACAAGTGAAGCCAGTAAGGCAGCCAAAACCGAAGGCAAAGGATCCCAACAAAAGAGATATGAGTTTAGAGGAGAAACACAGATTGGGAATCGGATTGCAGGGCTTGCCTCCTGAAAAGATGGATCAGGTGGTACAGATTGTGAAGAAGAGAAGTGGACATTTGAGACAGGATGGGGATGAGATTGAGCTTGACATTGAAGCAGTCGATACCGAGACCCTTTGGGAACTCGACCGGCTGGTGACGAATTGGAAGAAAATGATGAGCAAAGTCAAGCGGCAAGCTCTCATTAATGACAATGCAAATGCAGATTTGAATAAAGAGAATAATGAGATAATATCATCTGCAAATGAGATGAATGAGGTTAAAACAGAGGCGAAGAAGCTTAGAAAAGGGGATGTGGCTGAGGAAGATGTGGACATTGGAGATGAGTTGATACCAATGGGTGGTTTCCCTCCTGTTGAAATTGAAAGAGATGCAGCTGCTCATGCTAGTAGTAGTTCTGATAGCTCTAGTAGTTCAGGGAGTGATGATTCATCCTCTTCAAGTGGTTCCGATTCAGAAGGTAGCTCCACGGACAGTGATTCAGATGGTGATGGCCAATCGAACCAGTCTCAAAAGTTTTGTTCTCGGAGCAGAAATCTGAATCTTCGTGCCATTTACGATGTGCAGAGCATAGAGTTCATCAAATGCCTTTCCTCCTCCCATCCATCGAAGTTTCCATCTCAGTTGTAA 1758 43.46 MASAILANHEPSWPTSNKRNGSGGVGGGAFMARVPFSNPKSKPNMKKRKTNGEINNFHQMGEEMGNVTTLSPSDNGSFIDRYNGSSNFEYNQYVSFNITSCSGRDLFELKKRLLGELEQVRRIKNRIESGDIGSGPNYFKKSSKTKGLNKRPKMPSNFGRDLQVTNSFEVGNLMKTCAQILNKLMKQKYGLIFNKPVDVVGLGLHDYYDIIKHPMDLGTVKSKLAKNLYDSPLDFADDVRLTFNNAMMYNPKGHEVHVLAEQWLVKFEEMFLPVSLKLGALKQPDPYEEELQASSWNRVEEVEKVNFNSNGNKSEEVRVPSSSSKPPSVQSPVRTPSPVRVPQVKPVRQPKPKAKDPNKRDMSLEEKHRLGIGLQGLPPEKMDQVVQIVKKRSGHLRQDGDEIELDIEAVDTETLWELDRLVTNWKKMMSKVKRQALINDNANADLNKENNEIISSANEMNEVKTEAKKLRKGDVAEEDVDIGDELIPMGGFPPVEIERDAAAHASSSSDSSSSSGSDDSSSSSGSDSEGSSTDSDSDGDGQSNQSQKFCSRSRNLNLRAIYDVQSIEFIKCLSSSHPSKFPSQL 585
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8425122 8428704 - CrPI670011_01g007820.1 Cre01g0782 488327

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g0782 585 Gene3D - 355 432 IPR038336 -
Cre01g0782 585 MobiDBLite consensus disorder prediction 465 550 - -
Cre01g0782 585 MobiDBLite consensus disorder prediction 307 337 - -
Cre01g0782 585 MobiDBLite consensus disorder prediction 307 364 - -
Cre01g0782 585 Coils Coil 439 466 - -
Cre01g0782 585 ProSiteProfiles Bromodomain profile. 185 257 IPR001487 GO:0005515(InterPro)
Cre01g0782 585 MobiDBLite consensus disorder prediction 134 156 - -
Cre01g0782 585 CDD Bromo_plant1 173 271 IPR037377 -
Cre01g0782 585 MobiDBLite consensus disorder prediction 504 550 - -
Cre01g0782 585 PRINTS Bromodomain signature 220 238 IPR001487 GO:0005515(InterPro)
Cre01g0782 585 PRINTS Bromodomain signature 238 257 IPR001487 GO:0005515(InterPro)
Cre01g0782 585 PRINTS Bromodomain signature 204 220 IPR001487 GO:0005515(InterPro)
Cre01g0782 585 PRINTS Bromodomain signature 188 201 IPR001487 GO:0005515(InterPro)
Cre01g0782 585 ProSiteProfiles NET domain profile. 352 433 IPR027353 -
Cre01g0782 585 MobiDBLite consensus disorder prediction 1 49 - -
Cre01g0782 585 SUPERFAMILY Bromodomain 168 271 IPR036427 GO:0005515(InterPro)
Cre01g0782 585 Gene3D - 159 276 IPR036427 GO:0005515(InterPro)
Cre01g0782 585 PANTHER OSJNBA0053K19.4 PROTEIN 52 537 - -
Cre01g0782 585 MobiDBLite consensus disorder prediction 349 364 - -
Cre01g0782 585 Pfam Bromodomain 177 261 IPR001487 GO:0005515(InterPro)
Cre01g0782 585 Pfam Bromodomain extra-terminal - transcription regulation 362 423 IPR027353 -
Cre01g0782 585 SMART bromo_6 166 276 IPR001487 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g0782 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0782 Cre-Chr1:8425122 Cre10g1139 Cre-Chr10:23482575 6.10E-140 dispersed
Cre01g0782 Cre-Chr1:8425122 Cre09g1080 Cre-Chr9:11130793 5.50E-56 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g868 . . . . . . Bma05g00620 . . Cmo11g01450 . . . . Sed08g2798 Cpe04g00359 . Bhi05g00968 Tan02g1117 Cmetu01g2617 Lac12g0105 Hepe02g0695 . . Cla10g00935 Cam10g0956 Cec10g0994 Cco10g0953 Clacu10g0981 Cmu10g1766 Cre10g1139 . Cone9ag1431 . . . Csa07g00643 . Cme01g00160 . Blo13g00200 Bda15g00483 . . Bpe05g00445 . Bma08g00032 . . . Cma11g01678 . Car11g01166 . . . . . . . . . . Cla09g01617 Cam09g1535 Cec09g1779 Cco09g1862 . . Cre01g0782 . . Chy01g00168 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001096 3 2 3 3 1 2 4 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 2 8 5 1 80