Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g0789 ATGGCGGCGGCTGCGGGGGGTTTGATGACTGGCTCTACCCGTCCGAGTGTTGAATTTATTGCTCCTTCAACGTCGTATTCTGCTGCGGTGCGTGTGTTCTTCAAGCCCTTTAAGGGTAAGAGACTTATGCTGAAGAAGGGAGGTTCTTGGGGTCCTAGGTGCGAGGTCGATCCCAATTCCACCTCGGTTCGAAGCGATCTGATTGGTTCGAATGCACCTGGTCTTTCGGCTCTTGAATTGCTTAAGACTTCTTCAGTTAATAGATATACAAGAGAAAGGAGCAGTATTGTGGTGATTGGTCTTAATGTTCACACTGCACCAGTAGAGTTGCGTGAGAAACTTGCCATTCCAGAAGCTCAATGGCCTCAGGCCATTGGTGAACTCTGTGCTCTGAACCATATAGAAGAAGCTGCTGTTCTTAGTACTTGTAATCGGATCGAGATTTATGTTGTAGCATTGTCGCAGCATCGTGGGGTTAAAGAAGTGACAGAATGGATGTCCAAGAGAAGTGGAATTCCTATGTCAGAGCTTTGTAAGCCTAGGGTTCTATTATACAATAACGATGCGACTCAGCACCTCTTTGAAGTTTCTGCGGGTCTCGACTCTCTTGTGCTTGGAGAAGGTCAAATTCTTGCTCAGGTGAAACATGTTGTTAAAACAGGACAAGGTGTAGCTGGTTTTGACAGAAAAATTAGTGGGTTGTTCAAGCATGCAATCACTGTCGGAAAGCGGGTTAGAACCGAGACCAACATTTCCTCAGGGTCGGTTTCTGTCAGTTCGGCTGCTGTGGAGCTCGCACAGAAGAAACTTCCAGAATCTTCATATGCTACTGCAAAAGTGATGGTAGTTGGTGCAGGAAAAATGGGAAAACTTGTGATCAAACACTTGGTCGCAAAAGGATGTAGGAAGATGATGGTTGTGAACAGAACTCAGGACAGTGTCGATGCTCTAAGCAAGGAACTCAAAGATGTTGAGATAATCTACAAACCCCTCCCAGAGATTTTAGCGTGTGCTGCTGAAGCAGATGTCATCTTCACCTGCACTGCTTCGAAAACACCCTTATTCATGAAAGAACATGTAGGTATGCTCCCCTCTCCACGGACTGTAACAGGAAGACGTTTATTTGTCGATATATCAGTTCCAAGGAATGTCGAGCCATGTATATCAGATCTTGAGACCGTGTCTGTCTTCAATGTGGACGATCTCAAGGAAGTTGTGGCTGCTAACAAGGAGGATAGACTACAGAAAGTTCAGGAGGCTCAGTCGATAATCGCAGAAGAAATAAACAAATTTCAAGCATGGAAGGATTCCCTTGAAACTGTTCCTACCATCAAGAAGTTTAGAGCTTATGTTGAGAGGATTAGGACTGCTGAACTAGACAAATGTTTGTCTAAGATGGGTGAAGACATCCCAAAGAAAAAGAAAGTAGCCATTAATGATCTTAGCTTGGGTATAGCTAACAAGCTACTTCATGGTCCAATACAGCACTTGAGATGTGATGGCAATGATAGCCGGACGTTGGATGAGATACTTCAGAATATGCATGCTATTAACAGAATGTTTGATCTTGAGACAGATTTGTCCGTCTTGGAAGATAAGATTAGAGCAAAAGTTGAACGTGGCCAGAAGTAG 1632 44.3 MAAAAGGLMTGSTRPSVEFIAPSTSYSAAVRVFFKPFKGKRLMLKKGGSWGPRCEVDPNSTSVRSDLIGSNAPGLSALELLKTSSVNRYTRERSSIVVIGLNVHTAPVELREKLAIPEAQWPQAIGELCALNHIEEAAVLSTCNRIEIYVVALSQHRGVKEVTEWMSKRSGIPMSELCKPRVLLYNNDATQHLFEVSAGLDSLVLGEGQILAQVKHVVKTGQGVAGFDRKISGLFKHAITVGKRVRTETNISSGSVSVSSAAVELAQKKLPESSYATAKVMVVGAGKMGKLVIKHLVAKGCRKMMVVNRTQDSVDALSKELKDVEIIYKPLPEILACAAEADVIFTCTASKTPLFMKEHVGMLPSPRTVTGRRLFVDISVPRNVEPCISDLETVSVFNVDDLKEVVAANKEDRLQKVQEAQSIIAEEINKFQAWKDSLETVPTIKKFRAYVERIRTAELDKCLSKMGEDIPKKKKVAINDLSLGIANKLLHGPIQHLRCDGNDSRTLDEILQNMHAINRMFDLETDLSVLEDKIRAKVERGQK 543
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8534367 8536455 - CrPI670011_01g007890.1 Cre01g0789 488334

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g0789 543 SUPERFAMILY Glutamyl tRNA-reductase dimerization domain 417 505 IPR036453 GO:0008883(InterPro)|GO:0033014(InterPro)|GO:0050661(InterPro)
Cre01g0789 543 Pfam Glutamyl-tRNAGlu reductase, N-terminal domain 99 249 IPR015895 GO:0008883(InterPro)|GO:0033014(InterPro)|GO:0050661(InterPro)
Cre01g0789 543 NCBIfam glutamyl-tRNA reductase 96 504 IPR000343 GO:0008883(InterPro)|GO:0033014(InterPro)|GO:0050661(InterPro)
Cre01g0789 543 CDD NAD_bind_Glutamyl_tRNA_reduct 96 417 - -
Cre01g0789 543 FunFam Glutamyl-tRNA reductase 254 412 - -
Cre01g0789 543 Hamap Glutamyl-tRNA reductase [hemA]. 95 521 IPR000343 GO:0008883(InterPro)|GO:0033014(InterPro)|GO:0050661(InterPro)
Cre01g0789 543 SUPERFAMILY Glutamyl tRNA-reductase catalytic, N-terminal domain 95 251 IPR036343 GO:0008883(InterPro)|GO:0033014(InterPro)|GO:0050661(InterPro)
Cre01g0789 543 Pfam Glutamyl-tRNAGlu reductase, dimerisation domain 419 523 IPR015896 GO:0008883(InterPro)|GO:0033014(InterPro)|GO:0050661(InterPro)
Cre01g0789 543 Pfam Shikimate / quinate 5-dehydrogenase 264 405 IPR006151 -
Cre01g0789 543 Gene3D - 94 254 IPR036343 GO:0008883(InterPro)|GO:0033014(InterPro)|GO:0050661(InterPro)
Cre01g0789 543 ProSitePatterns Glutamyl-tRNA reductase signature. 192 215 IPR018214 GO:0008883(InterPro)
Cre01g0789 543 Gene3D - 255 406 - -
Cre01g0789 543 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 254 413 IPR036291 -
Cre01g0789 543 FunFam Glutamyl-tRNA reductase 95 254 - -
Cre01g0789 543 PANTHER GLUTAMYL-TRNA REDUCTASE 1, CHLOROPLASTIC 42 539 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g0789 K02492 - - csv:101208135 887.1
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0789 Cre-Chr1:8534367 Cre08g1134 Cre-Chr8:24546293 1.10E-207 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g877 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi03g00657 Csa07g00638 . Cme01g00165 . . . . . . . . . . . . . . . . . . . . . . . . Cla09g01608 Cam09g1542 Cec09g1771 Cco09g1855 . . Cre01g0789 . . Chy01g00173 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014173 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 0 23