Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g0791 ATGGCCGTAGAAATGGACACTTCTGGGTTTGTCTTTAAACTAGCAAATGTTTCTCACTGTATTCAAATTGGGTGTATTGGATTTATGAGTTTAGGCAATATGTTGGAGCCTGTTAGTTGCTGCCAGAGCTCCCAGTCCCAGATTTATAGTGCAGTTAAACAGAAGAATCCCTTGAGGGCCTACTCTCATACTGTTCATCAACTTTGTGGACCTTCCTTCAACTTACAATATTCACACTCGAAGAAAGTAGCTTTTCCATCATGCACCTTAAATTGCTGGAGGAATGATTATTCTTTAGTCCCTGTACTTTTTCACAATGGTGCTACTACACTAACATTCAAAGTAGTTGAACAGAATGGGTACAATTGGTCAAATCATAGGCCTAAACAGAGGGAAAGATTGAGAATGCGTGCAGCTCTTGATGTTGCAGCTGCTGTTGACGTCATCAATGATTTAGGATTGGATACATTGACATTCCTAGCTGTGACTGTCATAGTTGTCCCTCTATTTAGGAGAATTAAGGCTAGCCCTATACTTGGTTTCTTCTTTGCTGGGATTGTACTTAATCAATTTGGCGTGATTAGAAATATTATAGATGTTAAAGTTTTGTCCGAATGGGGAATACTTTTCCTGCTATTTGAGATGGGTTTGGAGCTTTCATTTGCACGTCTAAAGGCTCTTGCAAGGTTTGCTTTTGGCATGGGTTTGACACAGGTCATATTATCTACTATCGCTTTCACAGCATTTGAACTTCCCCCAAATGGGGCTATTGGAACAAGAATTTTGGAGTTCCTTTTTCACGCCAAATCTGACTTGGTTAACATCAGAAGCGTTGATGAAGCTATTGTGATTGGTGCTGCCCTTTCTCTATCTTCTTCAGCTTTTGTTTTACAGCTTCTTGCAGAGAAAGGAGAGCTTGCGACAAGATTTGGCTCAGCAACTCTAGGGATACTTCTTCTTCAGGATATTGCTGTTGTCCCTCTCTTGGTCATACTTCCAGTTCTTGAGAGCCAGAATTTGGGCTCAGAAAGTATCTGGCCAATGCTCGCACAAGAAAGTTTGAAGGCTTTAGGTGGACTGGGTCTGCTGTCCCTTGGGGGAAAGTTGATTCTTAGGCGAGTTTTTGAGGTTGTGGCGGAAGCAAGAAGCTCAGAGGCTTTTGTGGCCCTTTGCCTGCTGACTGTTGCTGGCACTTCACTAATCACTCAGAAATTGGGCTTCAGTGATACGCTGGGAGCATTTTTGGCTGGGGCAATATTAGCAGAAACTAATTTCCGGACGCAGATTGAAGCAGACATTCGGCCATTTAGGGGCTTGCTCCTTGGGTTATTCTTTGTTACCACAGGGACCTCCATTGATATACAGCTCCTGTTCCGAGAATGGCCAAATGTTCTTGCACTTTTGGCAGGTTTAATAGCAATCAAGACCCTTATAATAACAGCAATAGGTCCCCGTGTGGGCCTCACTACTCAAGAAAGTGTAAGAATAGGCTTTCTTCTATCTCAAGGTGGCGAGTTCGGATTTGTAGTGTTTTCTCTAGCTAACAGGCTTGGAGTGCTTCCACTCGAGTTAAACAAGCTGCTCATCATTATTGTTGTCTTGTCAATGGCTCTAACCCCCTTGCTTAATGAAGCTGGACGAAAGGCATCTGAATTCATCAGCGAAAAGTACAAGGCAGAGGATAAAGCTGCAGATACAGTGAATTTTGACGCTACTGAACCTGTTGTCATTGTTGGATTTGGACAAATGGGTCAGGTTCTGGCAAATTTCTTGTCTACACCTTTGGCATCTGGGATAGATGGCAATACTCCTGGATGGCCATATGTAGCATTTGACATTGATCTTTCCGTAGTGAAGACGTCTAGAAAGCTTGGGTTTCCTGTTCTCTATGGAGATGGATCCCGACCAGCTGTTTTGCAATCTGCTGGAATCTCTTCCCCAAAAGCTGTCATGGTTATGTTCACAGAGAAGAAGGCAACAATTGATGCTGTTCAAAAGCTCCGACTTGCATTCCCAGCTATCCCAATTTATGCCCGAGCTAAGGATGTGGTGCATCTATTAGATTTAAAGACCGCAGGTGCAACGGATGCTATTTTGGAAGATGCTGAGACTAGTTTACAACTTGGGTCAAAGCTTTTGAAAGGCCTTGGAGTCATGTCTGACCAAGTGTCTTTCCTCAGTCAAATGGTTCGGAACTCTATGGAAATACAAGCTCAAGATGCACTCGACAAATCCAATGAGCAAGAGTTGGAGATTATGAAACCACTGCAGATACGTGTCAAGGACTCGATCGAGTCCCCTGAGAACAAACTGTCGAGGCTGAATGGGAAAGACAGTACTCAAATCTTAAATGGAAAAAAGGTGGATCAAATGAAGCAAGATACTGTTTTCCAGAAGCCTGAAGATATAGATGGAAATGGAGTCCTATACTGTGAACTTGACACGGAGAACAACTTTTTAGAACAAAATGTGGTAGAGCCTCCAACCCACATAACAGCCACTGATGGTTTAGAAAAGTGA 2520 42.98 MAVEMDTSGFVFKLANVSHCIQIGCIGFMSLGNMLEPVSCCQSSQSQIYSAVKQKNPLRAYSHTVHQLCGPSFNLQYSHSKKVAFPSCTLNCWRNDYSLVPVLFHNGATTLTFKVVEQNGYNWSNHRPKQRERLRMRAALDVAAAVDVINDLGLDTLTFLAVTVIVVPLFRRIKASPILGFFFAGIVLNQFGVIRNIIDVKVLSEWGILFLLFEMGLELSFARLKALARFAFGMGLTQVILSTIAFTAFELPPNGAIGTRILEFLFHAKSDLVNIRSVDEAIVIGAALSLSSSAFVLQLLAEKGELATRFGSATLGILLLQDIAVVPLLVILPVLESQNLGSESIWPMLAQESLKALGGLGLLSLGGKLILRRVFEVVAEARSSEAFVALCLLTVAGTSLITQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGTSIDIQLLFREWPNVLALLAGLIAIKTLIITAIGPRVGLTTQESVRIGFLLSQGGEFGFVVFSLANRLGVLPLELNKLLIIIVVLSMALTPLLNEAGRKASEFISEKYKAEDKAADTVNFDATEPVVIVGFGQMGQVLANFLSTPLASGIDGNTPGWPYVAFDIDLSVVKTSRKLGFPVLYGDGSRPAVLQSAGISSPKAVMVMFTEKKATIDAVQKLRLAFPAIPIYARAKDVVHLLDLKTAGATDAILEDAETSLQLGSKLLKGLGVMSDQVSFLSQMVRNSMEIQAQDALDKSNEQELEIMKPLQIRVKDSIESPENKLSRLNGKDSTQILNGKKVDQMKQDTVFQKPEDIDGNGVLYCELDTENNFLEQNVVEPPTHITATDGLEK 839
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8568599 8579176 + CrPI670011_01g007910.1 Cre01g0791 488336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g0791 839 Gene3D - 151 551 IPR038770 -
Cre01g0791 839 Pfam TrkA-N domain 575 698 IPR003148 GO:0006813(InterPro)
Cre01g0791 839 FunFam K(+) efflux antiporter 3, chloroplastic 151 550 - -
Cre01g0791 839 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 574 712 IPR036291 -
Cre01g0791 839 FunFam Glutathione-regulated potassium-efflux system protein KefB 572 744 - -
Cre01g0791 839 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 52 775 - GO:0009507(PANTHER)|GO:0016020(PANTHER)
Cre01g0791 839 Coils Coil 731 751 - -
Cre01g0791 839 Gene3D - 574 744 - -
Cre01g0791 839 Pfam Sodium/hydrogen exchanger family 162 543 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
Cre01g0791 839 ProSiteProfiles RCK N-terminal domain profile. 574 706 IPR003148 GO:0006813(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0791 Cre-Chr1:8568599 Cre05g0250 Cre-Chr5:2380133 5.20E-92 dispersed
Cre01g0791 Cre-Chr1:8568599 Cre08g1640 Cre-Chr8:28909566 2.20E-29 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g0791 K03455 - csv:101209266 1404.04