Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g0800 ATGTTGCAGTCTTCGATTCGGCGAGTGAGGAAGTTGAATGTTCTGAGGCCTCAGATCTTTGCTCTCGGAAATTCTCGTTTCTCCACTTTTGCTCAACCGTCTTCCAAGCCTCATCCTCCGAGGGTTCCAAATCTCATAGGAGGGACTTTTGTGGATTCTCAATCCTCAGCATTCATAGATGTCATAAACCCAGCAACACAAGAAGTTGTTTCTCAAGTTCCATTGACCACAAATGATGAATTTAAAGCTGCAGTGTCTGCAGCAAAGCAGGCTTTTCCTGCATGGCGTAATACTCCAGTTACAACTCGTCAACGAATTATGTTCAAGCTTCAGGAACTTATTAGGCGAGATATAGACAAACTTGCTCTGAATATTACCACCGAACAAGGAAAAACATTAAAGGATGCACATGGAGATGTATTCCGTGGGCTAGAGGTTGTGGAACATGCATGTGGAATGGCATCTCTGCAAATGGGGGAGTATGTCTCGAATGTGTCACATGGAATTGATACCTACAGCATCAGAGAGCCTCTTGGTGTTTGTGCTGGGATTTGTCCGTTCAATTTTCCAGCCATGATCCCCCTATGGATGTTCCCAATTGCTGTTACATGTGGGAATACCTTTGTTTTGAAGCCTTCAGAAAAAGATCCAGGGGCTTCTATAATCCTTGCAGAGTTAGCAATGGAGGCTGGATTGCCTAATGGTGTCCTAAATGTGGTTCATGGTACTAATGATGTTGTTAATGCCATTTGTGATGATGAAGATATAAAAGCAATATCATTTGTCGGTTCAAACATTGCGGGCATGCATATATATTCAAGGGGATCAGCTAAAGGAAAACGTGTGCAGTCCAATATGGGTGCAAAAAATCATGCAATTGTCTTGCCCGATGCCAGCATAGATGCTACTTTGAATGCTTTGGTTGCTGCTGGTTTTGGTGCTGCTGGACAAAGGTGTATGGCACTTAGTACAGTTGTCTTTGTTGGAGACTCCAAGTTGTGGGAGGATAAACTTGTAGAACGTGCCAAAACTCTGAAGGTAAACTCTGGAACAGAACCTGACGCAGATCTTGGTCCAGTAATTAGCAAGCAGGCAAAGGATAGGATTCACAGATTGGTTCAATCTGGCATCGATAGTGGAGCCAGGCTACTGCTAGATGGGAGAAATATAGTGGTTCCTGGATACGAGAGTGGAAATTTTATTGGCCCTACTATCTTAACAGATGTGACGCCGGACATGGAGTGCTACAAGGAAGAAATATTTGGCCCAGTTCTGCTTTGCATGCAGGCTGAAAGTTTAGAGGAGGCCATTAGCATCGTTAACGGAAATAGGTATGGGAATGGAGCTTCCATATTCACAACATCTGGGATAGCGGCGAGGAAGTTTCAAACGGATATTGAAGCCGGACAGGTTGGGATCAACGTTCCGATTCCGGTTCCCTTGCCCTTCTTCTCGTTCACTGGCTCCAAGGCATCTTTTGCTGGGGATCTCAATTTTTATGGCAAGGCTGGGGTCAACTTCTTCACACAGATCAAAACAGTGACACAACAATGGAAAGACTCAGCTGGGGGAACTACCGTCAACCTTGCAATGCCAACCTCTTTGAAGTCATAG 1614 44.61 MLQSSIRRVRKLNVLRPQIFALGNSRFSTFAQPSSKPHPPRVPNLIGGTFVDSQSSAFIDVINPATQEVVSQVPLTTNDEFKAAVSAAKQAFPAWRNTPVTTRQRIMFKLQELIRRDIDKLALNITTEQGKTLKDAHGDVFRGLEVVEHACGMASLQMGEYVSNVSHGIDTYSIREPLGVCAGICPFNFPAMIPLWMFPIAVTCGNTFVLKPSEKDPGASIILAELAMEAGLPNGVLNVVHGTNDVVNAICDDEDIKAISFVGSNIAGMHIYSRGSAKGKRVQSNMGAKNHAIVLPDASIDATLNALVAAGFGAAGQRCMALSTVVFVGDSKLWEDKLVERAKTLKVNSGTEPDADLGPVISKQAKDRIHRLVQSGIDSGARLLLDGRNIVVPGYESGNFIGPTILTDVTPDMECYKEEIFGPVLLCMQAESLEEAISIVNGNRYGNGASIFTTSGIAARKFQTDIEAGQVGINVPIPVPLPFFSFTGSKASFAGDLNFYGKAGVNFFTQIKTVTQQWKDSAGGTTVNLAMPTSLKS 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8929210 8937765 + CrPI670011_01g008000.1 Cre01g0800 488345

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g0800 537 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 287 487 IPR016163 GO:0016620(InterPro)
Cre01g0800 537 CDD ALDH_F6_MMSDH 42 518 IPR010061 GO:0004491(InterPro)
Cre01g0800 537 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 61 495 IPR016162 GO:0016491(InterPro)
Cre01g0800 537 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 6 534 IPR010061 GO:0004491(InterPro)|GO:0004491(PANTHER)|GO:0005739(PANTHER)|GO:0006210(PANTHER)|GO:0006574(PANTHER)|GO:0018478(PANTHER)
Cre01g0800 537 FunFam Methylmalonate-semialdehyde dehydrogenase [acylating] 46 293 - -
Cre01g0800 537 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 312 323 IPR016160 GO:0016491(InterPro)
Cre01g0800 537 NCBIfam CoA-acylating methylmalonate-semialdehyde dehydrogenase 44 518 IPR010061 GO:0004491(InterPro)
Cre01g0800 537 FunFam Methylmalonate-semialdehyde dehydrogenase (Acylating) 287 487 - -
Cre01g0800 537 Pfam Aldehyde dehydrogenase family 50 514 IPR015590 GO:0016491(InterPro)
Cre01g0800 537 SUPERFAMILY ALDH-like 35 519 IPR016161 GO:0016491(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g0800 K00140 - - csv:101204924 1014.22
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0800 Cre-Chr1:8929210 Cre04g1447 Cre-Chr4:33279659 3.10E-191 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre06g1867 . 1 502 Aldehyde Dehydrogenase Gene Family AT3G24503 69.6 5.7e-211 730.7
Cre02g1980 . 51 535 Aldehyde Dehydrogenase Gene Family AT3G24503 54.7 4.3e-158 555.1
Cre06g2558 . 72 556 Aldehyde Dehydrogenase Gene Family AT3G24503 54.3 4.9e-154 541.6
Cre06g2558 . 55 556 Aldehyde Dehydrogenase Gene Family AT3G48000 80.5 7.4e-249 856.7
Cre02g1980 . 1 535 Aldehyde Dehydrogenase Gene Family AT3G48000 75.3 4.0e-247 850.9
Cre06g1867 . 18 502 Aldehyde Dehydrogenase Gene Family AT3G48000 54.6 1.3e-160 563.5
Cre02g1980 . 1 385 Aldehyde Dehydrogenase Gene Family AT1G23800 75.7 4.7e-171 597.8
Cre06g2558 . 51 400 Aldehyde Dehydrogenase Gene Family AT1G23800 77.7 2.5e-164 575.5
Cre06g1867 . 18 346 Aldehyde Dehydrogenase Gene Family AT1G23800 54.7 9.3e-103 370.9
Cre11g1995 . 7 484 Aldehyde Dehydrogenase Gene Family AT4G34240 63.6 1.7e-181 632.9
Cre11g1996 . 7 570 Aldehyde Dehydrogenase Gene Family AT4G34240 53.5 1.3e-165 580.1
Cre11g1996 . 153 568 Aldehyde Dehydrogenase Gene Family AT1G44170 71.4 2.6e-177 618.6
Cre11g1995 . 72 482 Aldehyde Dehydrogenase Gene Family AT1G44170 71.8 5.9e-177 617.5
Cre02g2627 . 67 478 Aldehyde Dehydrogenase Gene Family AT1G44170 50.5 1.8e-117 419.9
Cre07g1260 . 84 498 Aldehyde Dehydrogenase Gene Family AT1G44170 50.1 9.9e-116 414.1
Cre07g1260 . 21 500 Aldehyde Dehydrogenase Gene Family AT4G36250 62.9 1.5e-184 642.9
Cre02g2627 . 2 480 Aldehyde Dehydrogenase Gene Family AT4G36250 56.2 2.2e-159 559.3
Cre02g2183 . 37 665 Aldehyde Dehydrogenase Gene Family AT1G79440 60.0 5.2e-207 717.6
Cre01g0800 . 12 502 Aldehyde Dehydrogenase Gene Family AT2G14170 82.7 1.4e-240 829.3
Cre04g1447 . 259 693 Aldehyde Dehydrogenase Gene Family AT2G14170 68.3 2.5e-181 632.5
Cre06g2537 . 1 501 Aldehyde Dehydrogenase Gene Family AT1G74920 81.6 1.9e-251 865.1
Cre06g2537 . 1 503 Aldehyde Dehydrogenase Gene Family AT3G48170 81.3 3.5e-253 870.9
Cre02g2024 . 1 502 Aldehyde Dehydrogenase Gene Family AT2G24270 89.8 1.0e-268 922.5
Cre01g1329 . 21 555 Aldehyde Dehydrogenase Gene Family AT5G62530 77.8 1.9e-260 895.2
Cre06g1221 . 1 587 Aldehyde Dehydrogenase Gene Family AT3G66658 76.7 1.6e-276 948.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004517 1 1 3 2 1 1 2 1 1 1 1 1 1 1 1 2 1 2 3 1 1 1 1 1 1 1 1 1 2 2 40