Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g0816 ATGCCGGACTCCAATTTCCAAGACACGATGTACGGTTCCGGAGTCATGAACAACGGTGGCCGGGATTTGGATAGCATTCAGAACAGAGTTGGCGATGAAGATGATGACATTAACGGCGGGGAAGAGTGCATAGATAATCCTCAGATGCGCTTCGAAGACTCTGGGGGAATGAGCGGCTCGGTCTCGGTAATGAACCGAGTCCAGGACGTTGTTCCTTCGACGTATGTTTCCAGCTCTGATTACAACCCTTTGACTGGAAACGGCGGTGCTGACCAACTTACGCTGTCGTTCCGAGGGGAGGTTTACGCTTTTGACTCTGTGTCACCGGACAAGGTGCAAGCGGTGCTTTTGCTTTTAGGTGGATATGAAATTCCTTCTGGTATTCCTGCAGTTGGAAGTGTTCCCATCAACCAGCAGGGTACCGATGGCTTTCCTGTCAGGTCAGTTCAACCACAAAGAGCTGCTTCATTAAGTAGATTTAGAGAGAAGAGAAAAGAAAGGTGTTTCGAGAAGAAAATTCGTTACAGTGTGCGAAAAGAAGTTGCGCTCAGAATGCAGCGGAAGAAGGGCCAGTTTATATCCTCTAAAGCCATTGGAGATGAAGTGGGCTCATCTTCAGTTTTGTCTCAGACGTTGGATTCTGGACAAAATGATGGCTTGTTGGAAACCTCATGTACCCATTGTGGAACCAGTTCAAAATCTACTCCAATGATGCGTCGTGGGCCTGCTGGGCCAAGGACTCTGTGCAATGCATGTGGGCTCAAGTGGGCCAATAAGGGAATCTTGAGGGATCTTTCCAAGGTTTCAAACACTGGCATCCAAGAACCCTCTGCGAAAGAGACTGAACAGAGCGACGGCGAAGCTGCTAATGAATCTGATGCTGCAATTAATGTGGATATTCTCACTTCTAATGGTGATAAATAG 924 47.84 MPDSNFQDTMYGSGVMNNGGRDLDSIQNRVGDEDDDINGGEECIDNPQMRFEDSGGMSGSVSVMNRVQDVVPSTYVSSSDYNPLTGNGGADQLTLSFRGEVYAFDSVSPDKVQAVLLLLGGYEIPSGIPAVGSVPINQQGTDGFPVRSVQPQRAASLSRFREKRKERCFEKKIRYSVRKEVALRMQRKKGQFISSKAIGDEVGSSSVLSQTLDSGQNDGLLETSCTHCGTSSKSTPMMRRGPAGPRTLCNACGLKWANKGILRDLSKVSNTGIQEPSAKETEQSDGEAANESDAAINVDILTSNGDK 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9273684 9279418 - CrPI670011_01g008160.1 Cre01g0816 488361

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g0816 307 MobiDBLite consensus disorder prediction 267 307 - -
Cre01g0816 307 Pfam GATA zinc finger 225 260 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cre01g0816 307 PANTHER GATA TRANSCRIPTION FACTOR 28 43 299 IPR045280 GO:0006355(InterPro)
Cre01g0816 307 Gene3D - 221 286 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cre01g0816 307 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 222 271 - -
Cre01g0816 307 ProSitePatterns GATA-type zinc finger domain. 225 252 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cre01g0816 307 ProSiteProfiles Tify domain profile. 86 121 IPR010399 -
Cre01g0816 307 ProSiteProfiles CCT domain profile. 153 195 IPR010402 GO:0005515(InterPro)
Cre01g0816 307 CDD ZnF_GATA 224 274 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cre01g0816 307 SMART tify_2 86 121 IPR010399 -
Cre01g0816 307 Pfam CCT motif 153 195 IPR010402 GO:0005515(InterPro)
Cre01g0816 307 Pfam tify domain 90 120 IPR010399 -
Cre01g0816 307 MobiDBLite consensus disorder prediction 1 23 - -
Cre01g0816 307 ProSiteProfiles GATA-type zinc finger domain profile. 224 276 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cre01g0816 307 SMART GATA_3 219 272 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g0816 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0816 Cre-Chr1:9273684 Cre08g1100 Cre-Chr8:24167984 2.30E-61 dispersed
Cre01g0816 Cre-Chr1:9273684 Cre01g1541 Cre-Chr1:28617391 4.70E-06 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre09g0151 . 1 230 Tify Gene Family AT3G21175 54.8 5.9e-56 214.5
Cre08g1100 . 226 473 Tify Gene Family AT4G24470 54.5 1.5e-68 256.9
Cre01g0816 . 89 267 Tify Gene Family AT4G24470 59.1 1.5e-47 187.2
Cre09g0151 . 73 273 Tify Gene Family AT4G24470 52.5 1.5e-44 177.2
Cre09g0151 . 1 290 Tify Gene Family AT1G51600 58.0 6.5e-85 311.2
Cre01g0816 . 86 303 Tify Gene Family AT1G51600 54.4 7.2e-52 201.4
Cre08g1099 . 74 249 Tify Gene Family AT1G51600 59.0 8.0e-51 198.0
Cre08g1100 . 220 427 Tify Gene Family AT1G51600 51.8 4.1e-47 185.7
Cre08g1100 . 226 473 Tify Gene Family AT4G24470 54.5 1.5e-68 256.9
Cre01g0816 . 89 267 Tify Gene Family AT4G24470 59.1 1.5e-47 187.2
Cre09g0151 . 73 273 Tify Gene Family AT4G24470 52.5 1.5e-44 177.2
Cre09g0151 . 1 290 Tify Gene Family AT1G51600 58.0 6.5e-85 311.2
Cre01g0816 . 86 303 Tify Gene Family AT1G51600 54.4 7.2e-52 201.4
Cre08g1099 . 74 249 Tify Gene Family AT1G51600 59.0 8.0e-51 198.0
Cre08g1100 . 220 427 Tify Gene Family AT1G51600 51.8 4.1e-47 185.7
Cre09g0151 . 1 230 Tify Gene Family AT3G21175 54.8 5.9e-56 214.5
Cre06g1398 . 1 180 Tify Gene Family AT4G14713 53.1 1.1e-46 183.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005475 1 2 2 2 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 4 1 0 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53004 PF06203 CCT 1.60E-15 CL0281 Cre TF