Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g0838 ATGCCTTACGATCCTCACTTTCGGGCTGATGTTCCCGTAAATGTTAACGACAACAAATTCACAATTTATCCAAGAGCTCTAAACATTACATGGGGTAATGATAAGCGATATTGGAACTTACCTCGTCGAGACCCGAAGAACCTCAACCAAGAGGGTTTTGCAGAGCTGAAACAAGTATGCTGGTTGGAAGTAACTGGTTCAACTGAGAAAGATGTTGTGCCTGGAAAAGAGTACAAAGTGGGGTTTGTGGTATCACTAAGACCAGATGCTTTTGGATGGGATGATTGTAGCGTTTACATAATGGCTAAGATTGGGAAAAAGGGGAGTTTCTCTTTCAAGAAAATCAGTCTTGCAGGCAAACCTACAGATCTCACAAAATTTACCATTCCTAATGATGATGATAAGTTGACCATCGAAGTCGCTGATCCCAAACAACGCAAACCGTCTGAAAATGATGATCTAAAGCTCTATTTTGGTCTCTATGAGGTTTGGACCAATAGATGGAAGGGAGGGTTGAGAATCCATCATGCATTTGTTCAAGGTGTTCACTCCACCAATAAAAGCACTCAATCAAAGTAA 579 41.11 MPYDPHFRADVPVNVNDNKFTIYPRALNITWGNDKRYWNLPRRDPKNLNQEGFAELKQVCWLEVTGSTEKDVVPGKEYKVGFVVSLRPDAFGWDDCSVYIMAKIGKKGSFSFKKISLAGKPTDLTKFTIPNDDDKLTIEVADPKQRKPSENDDLKLYFGLYEVWTNRWKGGLRIHHAFVQGVHSTNKSTQSK 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10017965 10020708 - CrPI670011_01g008380.1 Cre01g0838 488383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g0838 192 PANTHER F-BOX DOMAIN-CONTAINING PROTEIN 17 177 - -
Cre01g0838 192 Pfam Phloem protein 2 18 176 IPR025886 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0838 Cre-Chr1:10017965 Cre01g0842 Cre-Chr1:10435985 1.40E-48 dispersed
Cre01g0837 Cre-Chr1:9995976 Cre01g0838 Cre-Chr1:10017965 3.10E-39 tandem
Cre01g0838 Cre-Chr1:10017965 Cre01g0839 Cre-Chr1:10305731 5.60E-42 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g0838 - - - 0.0