Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre01g0842 | ATGGCTAACTTTTCAAAACCCCATTATGATGCTGATCCAAGGGCCGTAGAAACTATCAAGGGCTGCAGAACTGTATTTTATCCGAGAGCATTCAACATCACATGGGGCAATGACAATCGCTATTGGCGTTTTCCTCGTCAAAGCATTAATTTGAAGGACCCAAAATCAGCTGTGCAACTATTGCAAGTGAGTTGGCTAGAAGTGACTTGTTCAACAGACAATGTGGAGGCTGGCAAGACCTATAAAGTGGGCTTCAATGTATCACTTCAACCAGATGCATTTGGGTGGAATGAGCTTGAAGTTTTCATAATGGCCAAGGTTGGAAAAAAGGGAAACTACATTTTCAAGAAGACTAATCTTGGGAACAAACCTACAAACTCCACAAAGTTTAGTGTTCCCGAGGAGGGTTTGGAAATGGAAGTTGTTGCACCACCAAGCTCCCCAGGAGATTGCAGGCTCTATTTTGGACTTTATGAAGTTTGGAGTGGCAAATGGAAGGGAGGCCTGCAGATTCATAATGCTTTTGTTGAGAAAGTTTGA | 540 | 42.78 | MANFSKPHYDADPRAVETIKGCRTVFYPRAFNITWGNDNRYWRFPRQSINLKDPKSAVQLLQVSWLEVTCSTDNVEAGKTYKVGFNVSLQPDAFGWNELEVFIMAKVGKKGNYIFKKTNLGNKPTNSTKFSVPEEGLEMEVVAPPSSPGDCRLYFGLYEVWSGKWKGGLQIHNAFVEKV | 179 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 10435985 | 10437405 | + | CrPI670011_01g008420.1 | Cre01g0842 | 488387 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre01g0842 | 179 | Pfam | Phloem protein 2 | 25 | 173 | IPR025886 | - | |
| Cre01g0842 | 179 | PANTHER | F-BOX DOMAIN-CONTAINING PROTEIN | 23 | 174 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cre01g0837 | Cre-Chr1:9995976 | Cre01g0842 | Cre-Chr1:10435985 | 9.70E-49 | dispersed | |
| Cre01g0838 | Cre-Chr1:10017965 | Cre01g0842 | Cre-Chr1:10435985 | 1.40E-48 | dispersed | |
| Cre01g0842 | Cre-Chr1:10435985 | Cre04g2189 | Cre-Chr4:39027114 | 1.90E-31 | dispersed | |
| Cre01g0841 | Cre-Chr1:10424668 | Cre01g0842 | Cre-Chr1:10435985 | 2.60E-65 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre01g0842 | - | - | - | 0.0 |