Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g0871 ATGGCTCTGCGGGACTTCCTCTTCCTGTTTTTCTTCTTGATCTTTGGTTGTATTCCATTTACTCGTGCTCTTACTGATGCTTCTGATGTTCAAGCTTTGCAAGTTATATACACCTCATTGAACAGTCCTCCTCAGCTGACTGGTTGGATTGGTAATGGAGGCGATCCATGTGTAGAGTCATGGAAAGGGGTGACTTGTGAAGGATCTGCTGTTGTTTCCATTGAGATTTCTGGGTTAGGGCTGAATGGAACGATGGGTTATGCGCTCTCAAGTTTTTTGTCATTGAAAAAGCTTGATATGAGCGACAACAATATTCATGACACGATTCCTTACCAATTGCCGCCGAACCTCACGAGCCTAAATATGGCAAAAAACAGCTTAAGTGGTAATCTTCCTTATTCCTTTTCCACCATGGCTTCTCTCAGTTATTTGAATATGAGCCACAATTTGCTATCTCAGGCGATAGGAGATGTTTTCACCAATCTTACTACCCTGGGGACCTTGGACCTTTCTTTCAACAACTTTACTGGGGATCTTCCCAAGTCCTTGGGAACTTTATCCAATGTTTCTTCCTTGTTTTTGCAGAACAACCAATTGACTGGCTCTCTCAATATTCTTATCGATTTGCCTCTGACCACTCTAAATGTAGCAAATAATAATTTCAGTGGATGGATACCTCAAGAACTGAAGTCGGTTGAAAATTTCATGTATGATGGAAATTCATTTGACCATAGTCCTGCACCTCCTCCACCACCTTTTACTCCACCTCCTCCTGGTAGATCTCGTAGTAGCCCCAGACATCCTGGGTCTAGCGGTGGCACCCATACTGCCCCAAGTTCTGATGGGAGCTCATCCCACTCAAACAAAGGCTTGCCAGTTTTGGCTATAGTGGGGATAATTTTGGGTGCTATAATTTTTGTCCTCATTGTGTTAGTTGCTTTTGCTGTCTGCATCCAGAAGAGAAAACGAAAGAACATTGGTCTTCGAGCTTCCAGTGGAAGGCTGTCTGTTGGCACCAGTGTGAATGCTGAGGTGCAAGAGCATCGGGTGAAAAGTGTTGCTGCTGTTGCCGATATTAAGCCTCTTCCTGCAGAGAAAATGAATCCTGAGAGGTTGCCGGCGAAAAATGGATCGGTGAAAAGAATAAAGTCCCCTATTACTGCTACTTCGTACACCGTTGCTTCCCTTCAAACTGCAACAAATAGTTTTAGCCAAGAATGCATAGTTGGTGAAGGTTCTCTTGGTCGGGTTTACAAAGCTGACTTTCCTAATGGGAAGATAATGGCGATTAAGAAAATCGATAATGCAGCGCTGTCACTACAGGAAGAAGACAATTTTCTTGAAGCAGTTTCAAACATGTCAAGGTTGAGGCATACAAACATTGTCACACTAAATGGTTATTGTGCAGAGCACGGCCAGCGTCTTCTAGTTTATGAGTTCATTGGAAATGGAAGTTTACATGACATGCTGCATTTTGCTGAAGAAAGTAGTAAGACACTGACTTGGAACGCACGTGTCCGGGTAGCACTTGGAACTGCTAGAGCTTTAGAGTACTTGCATGAGGTTTGCTTGCCTTCTGTTGTACATAGAAACTTGAAGACTGCAAACATATTACTTGATGAAGATCTCAACCCCCATTTGTCAGATTGTGGTTTGGCTGCTTTAACACCCAACACAGAGCGGCAGATTTCTACTCAGATGGTTGGTTCATTTGGCTATAGTGCTCCGGAATTTGCCTTGTCAGGAATATACACCGTCAAAAGTGACGTGTACAGCTTTGGGGTGGTGATGTTGGAGCTCTTGACTGGCCGAAAGCCGCTTGACAGTTCTAGGGTGAGATCAGAGCAGTCACTTGTGAGATGGGCTACTCCCCAACTACATGATATCGACGCCTTAGCAAAAATGGTAGATCCTACTTTGAACGGAATGTACCCTGCGAAATCTCTGTCCCGCTTTGCTGACATCATTGCTCTCTGTGTTCAGCCTGAGCCTGAATTTCGACCTCCCATGTCCGAAGTAGTACAAGCACTGGTGCGTTTAGTGCAAAGAGCGAGTGTGGTAAAAAGGCATTCGAGCGATGAGACAGGTTTCAGTTACAGAACGCCTGAGCACGATGCAGTTGAGTTGCCATTTTGA 2136 44.43 MALRDFLFLFFFLIFGCIPFTRALTDASDVQALQVIYTSLNSPPQLTGWIGNGGDPCVESWKGVTCEGSAVVSIEISGLGLNGTMGYALSSFLSLKKLDMSDNNIHDTIPYQLPPNLTSLNMAKNSLSGNLPYSFSTMASLSYLNMSHNLLSQAIGDVFTNLTTLGTLDLSFNNFTGDLPKSLGTLSNVSSLFLQNNQLTGSLNILIDLPLTTLNVANNNFSGWIPQELKSVENFMYDGNSFDHSPAPPPPPFTPPPPGRSRSSPRHPGSSGGTHTAPSSDGSSSHSNKGLPVLAIVGIILGAIIFVLIVLVAFAVCIQKRKRKNIGLRASSGRLSVGTSVNAEVQEHRVKSVAAVADIKPLPAEKMNPERLPAKNGSVKRIKSPITATSYTVASLQTATNSFSQECIVGEGSLGRVYKADFPNGKIMAIKKIDNAALSLQEEDNFLEAVSNMSRLRHTNIVTLNGYCAEHGQRLLVYEFIGNGSLHDMLHFAEESSKTLTWNARVRVALGTARALEYLHEVCLPSVVHRNLKTANILLDEDLNPHLSDCGLAALTPNTERQISTQMVGSFGYSAPEFALSGIYTVKSDVYSFGVVMLELLTGRKPLDSSRVRSEQSLVRWATPQLHDIDALAKMVDPTLNGMYPAKSLSRFADIIALCVQPEPEFRPPMSEVVQALVRLVQRASVVKRHSSDETGFSYRTPEHDAVELPF 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11709977 11715199 + CrPI670011_01g008710.1 Cre01g0871 488416

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g0871 711 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 481 691 - -
Cre01g0871 711 CDD STKc_IRAK 409 680 - -
Cre01g0871 711 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 211 682 IPR046959 -
Cre01g0871 711 Pfam Leucine Rich Repeat 165 186 IPR001611 GO:0005515(InterPro)
Cre01g0871 711 Pfam Leucine Rich Repeat 211 230 IPR001611 GO:0005515(InterPro)
Cre01g0871 711 Pfam Leucine Rich Repeat 94 113 IPR001611 GO:0005515(InterPro)
Cre01g0871 711 Pfam Leucine Rich Repeat 116 137 IPR001611 GO:0005515(InterPro)
Cre01g0871 711 Gene3D Ribonuclease Inhibitor 25 252 IPR032675 -
Cre01g0871 711 Gene3D Transferase(Phosphotransferase) domain 1 481 704 - -
Cre01g0871 711 MobiDBLite consensus disorder prediction 244 263 - -
Cre01g0871 711 SUPERFAMILY Protein kinase-like (PK-like) 383 677 IPR011009 -
Cre01g0871 711 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
Cre01g0871 711 Gene3D Phosphorylase Kinase; domain 1 366 480 - -
Cre01g0871 711 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 26 253 - -
Cre01g0871 711 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Cre01g0871 711 SUPERFAMILY L domain-like 25 232 - -
Cre01g0871 711 MobiDBLite consensus disorder prediction 264 286 - -
Cre01g0871 711 ProSiteProfiles Protein kinase domain profile. 403 680 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre01g0871 711 MobiDBLite consensus disorder prediction 240 286 - -
Cre01g0871 711 Pfam Protein kinase domain 406 675 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre01g0871 711 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 368 480 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g0871 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0871 Cre-Chr1:11709977 Cre08g0455 Cre-Chr8:15567662 1.20E-134 dispersed
Cre01g0871 Cre-Chr1:11709977 Cre07g1782 Cre-Chr7:33278222 1.00E-152 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre02g0464 . 34 786 Strubbelig Receptor Gene Family AT4G03390 62.6 1.5e-205 713.4
Cre04g1889 . 17 730 Strubbelig Receptor Gene Family AT4G03390 51.8 7.8e-151 531.6
Cre09g0136 . 393 687 Strubbelig Receptor Gene Family AT4G03390 58.4 6.3e-92 335.9
Cre10g1853 . 1 704 Strubbelig Receptor Gene Family AT5G06820 51.5 2.9e-171 599.4
Cre08g0455 . 22 706 Strubbelig Receptor Gene Family AT1G78980 60.1 2.0e-193 672.9
Cre07g1782 . 164 853 Strubbelig Receptor Gene Family AT1G78980 50.9 4.4e-145 512.3
Cre09g0136 . 24 690 Strubbelig Receptor Gene Family AT1G78980 50.1 9.0e-122 434.9
Cre08g0455 . 20 684 Strubbelig Receptor Gene Family AT3G13065 54.1 5.5e-148 521.9
Cre01g0871 . 388 681 Strubbelig Receptor Gene Family AT1G11130 53.4 6.6e-85 312.4
Cre10g1853 . 1 704 Strubbelig Receptor Gene Family AT5G06820 51.5 2.9e-171 599.4
Cre02g0464 . 34 786 Strubbelig Receptor Gene Family AT4G03390 62.6 1.5e-205 713.4
Cre04g1889 . 17 730 Strubbelig Receptor Gene Family AT4G03390 51.8 7.8e-151 531.6
Cre09g0136 . 393 687 Strubbelig Receptor Gene Family AT4G03390 58.4 6.3e-92 335.9
Cre08g0455 . 20 684 Strubbelig Receptor Gene Family AT3G13065 54.1 5.5e-148 521.9
Cre08g0455 . 22 706 Strubbelig Receptor Gene Family AT1G78980 60.1 2.0e-193 672.9
Cre07g1782 . 164 853 Strubbelig Receptor Gene Family AT1G78980 50.9 4.4e-145 512.3
Cre09g0136 . 24 690 Strubbelig Receptor Gene Family AT1G78980 50.1 9.0e-122 434.9
Cre07g1782 . 159 853 Strubbelig Receptor Gene Family AT1G53730 60.5 5.9e-201 698.0
Cre09g0136 . 1 712 Strubbelig Receptor Gene Family AT1G53730 60.5 6.9e-186 647.9
Cre01g0871 . 9 689 Strubbelig Receptor Gene Family AT1G53730 50.7 1.8e-146 516.9
Cre07g1782 . 159 848 Strubbelig Receptor Gene Family AT3G14350 57.0 2.1e-179 626.3
Cre09g0136 . 6 702 Strubbelig Receptor Gene Family AT3G14350 55.4 1.4e-167 587.0
Cre01g0871 . 138 711 Strubbelig Receptor Gene Family AT4G22130 62.8 1.9e-178 622.9
Cre07g1782 . 532 860 Strubbelig Receptor Gene Family AT4G22130 63.7 5.2e-120 428.7
Cre09g0136 . 391 704 Strubbelig Receptor Gene Family AT4G22130 64.6 5.4e-117 418.7
Cre02g0464 . 483 788 Strubbelig Receptor Gene Family AT4G22130 59.9 3.8e-107 386.0
Cre04g1889 . 442 730 Strubbelig Receptor Gene Family AT4G22130 59.8 5.0e-99 359.0
Cre08g0455 . 359 706 Strubbelig Receptor Gene Family AT4G22130 51.8 6.6e-99 358.6
Cre10g1853 . 365 687 Strubbelig Receptor Gene Family AT4G22130 52.6 1.9e-93 340.5
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63815 PF00069 Pkinase 3.50E-44 CL0016 Cre PK