Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g0893 ATGGATAATAGGAAGATGGGGAAAAGGTTTGAGGGGAAGGTCGCCATTGTTACTGCTTCAACTCAAGGTATCGGCTTCCAAATTGCTCAGCGTCTCGCCTTGGAAGGTGCCTCCGTCGTTATTTCTTCCCGTAGACAGAAAAACGTTGATGAGGCAATTGAAAAACTCAAAGCTCAAGGACTTGAAGTGTTAGGGATTGTTTGTCATGTATCAAATGCACAGCAAAGGAAGAATCTGGTGGAAAAGACTATCCAGAAATATGGAAAAATAGACGTGGTTGTATCGAATGCAGCTGTCAATCCATCAGTCGAATCCATCTTGCGAACTCAAGAATCTGTCCTTGACAAGTTGTGGGACATAAATGTTAAAGCTTCGGTCCTCCTTTTGCAGGAAGTAGCTCCTCACTTGCAAAAAGGCTCTTCAGTTGTTCTTATTTCCTCCATTGAAGGATTCCAGCCTTCTGCCTTATTGGCCATGTATGGGGTGACAAAAACAGCCCTTCTTGGACTGACAAAGGCTCTTGCTGCAGAGATGGCCCCTGACACTCGTGTAAACTGTGTCGCTCCTGGTTTCGTGCCAACACACTTTGCTGATTTCCTTGTGTCTAATGAAGCCGTTAAAAAGGGAGTTGAGTCAAAGACTTTACTCAACCGGCTTGGTACGACTGAAGACATGGCTGCTGCCACTGCCTTCCTGGCATCGGATGACGCTTCGTATATTACTGGCGAAACTCTGGTTGTAGCTGGGGGGATGCCTTCCAGACTCTAG 768 46.22 MDNRKMGKRFEGKVAIVTASTQGIGFQIAQRLALEGASVVISSRRQKNVDEAIEKLKAQGLEVLGIVCHVSNAQQRKNLVEKTIQKYGKIDVVVSNAAVNPSVESILRTQESVLDKLWDINVKASVLLLQEVAPHLQKGSSVVLISSIEGFQPSALLAMYGVTKTALLGLTKALAAEMAPDTRVNCVAPGFVPTHFADFLVSNEAVKKGVESKTLLNRLGTTEDMAAATAFLASDDASYITGETLVVAGGMPSRL 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12421467 12424862 + CrPI670011_01g008930.1 Cre01g0893 488438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g0893 255 Pfam Enoyl-(Acyl carrier protein) reductase 19 251 - -
Cre01g0893 255 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 140 148 IPR002347 -
Cre01g0893 255 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 88 99 IPR002347 -
Cre01g0893 255 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 160 179 IPR002347 -
Cre01g0893 255 PANTHER DEHYDROGENASE/REDUCTASE (SDR FAMILY) MEMBER 4 5 255 - -
Cre01g0893 255 FunFam Short-chain dehydrogenase reductase 2 254 - -
Cre01g0893 255 Gene3D - 2 253 - -
Cre01g0893 255 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 11 251 IPR036291 -
Cre01g0893 255 PRINTS Glucose/ribitol dehydrogenase family signature 134 150 IPR002347 -
Cre01g0893 255 PRINTS Glucose/ribitol dehydrogenase family signature 215 235 IPR002347 -
Cre01g0893 255 PRINTS Glucose/ribitol dehydrogenase family signature 14 31 IPR002347 -
Cre01g0893 255 PRINTS Glucose/ribitol dehydrogenase family signature 88 99 IPR002347 -
Cre01g0893 255 PRINTS Glucose/ribitol dehydrogenase family signature 180 197 IPR002347 -
Cre01g0893 255 PRINTS Glucose/ribitol dehydrogenase family signature 160 179 IPR002347 -
Cre01g0893 255 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 147 175 IPR020904 GO:0016491(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0893 Cre-Chr1:12421467 Cre05g0913 Cre-Chr5:8363107 3.80E-22 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g0893 K11147 - csv:101214017 442.195