Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g0985 ATGGCTGCTGGTGGTGATTTCTTGCCCCCCTTGGTTATGCTGGTTGTCCAATTCCTATATGCAGGTTTGAATATTACATCAAAGTTAGCCATGGAGTTTGGGATGAATCCATTGGTTCTAGTTGCTTACAGGCAGATGTTTGCTACCATAGCCATAGCTCCTTGTGCTTACTGGTTTGAGAGAAAAGGGAGACCCAAGATTACAAAGCCTATCCTGTTTCAGATTCTACTTTGTTCCTTAACTGGGGCAACAGCAAACCAAGTCTTTTACTACGTTGGGTTGAAATATTCAACCCCCACCATCGCATGCGCATTGACCAATGTTCTGCCTGCTGCAACTTTTGTCCTCGCTGTTCTTTTCAGACAAGAATCTGTGGGGATCAAAACAAGCCCAGGTGCAGCTAAGGTGATGGGGACTGTTGTATGTGTCGGAGGGGCAATGTTGCTGTCGTTCTACCGTGGACAAACAATCCAGCTTGGTGAATCTGGTATTCATTGGAAGTATGCCGAGTTAATGAGGGGGGGAAGCTCAACCAACCAAGGCAGCAGCATCTGGGGCTCCCTCTGCTTGATCATAAGCTCTGTCGCTTGGGCGGCTTGGTTTGTCATCCAAGCGAGAGTGAATGAGAAGTTTCCAGCACCCTACACGAGCACAGCTCTCATGACTTTCATGGCAACCATTCAATGTGGAGCAATTGCAGTTGGCGTTGAGCACAAGACGGCTGCAGCTTGGTCATTGAAAAGTTCAATCAGGCTTGTTGGCGCTCTCTATGCGGGAGTGGCGTGCTCTGGGGTGGCATTTTGCCTAACCTCCTGGAGTATCCAAAAGAAAGGTCCTCTCTATGCCTCAGTCTTCAGCCCCTTCTTGCTCGTTATCGTGGCTATTTTCAGCTGGGCCTTTTTTCAAGAAAAATTATACGTCGGAACTGTTGTAGGGTCATTGTTGATTGTTGTTGGGCTATACGCTGTCCTATGGGGAAAGACCAAGGAGGTGAAACTACAACAACATATCGAAATGGCGGCGGCGGCAGAAGCAAAGCTAGATGACTGTAATAACAAAGACTTAGAAGAACAGTCCTATGTGGTTTCAAATGCCACTATTCTCCATAAGCATGATGAGAGCACCAGTCCGGCTTCAATATGTGAGCCAGTTCAACGATTCAGGGTAGTGGGTACTAGAACATTGGATTCAGCTTAA 1197 47.2 MAAGGDFLPPLVMLVVQFLYAGLNITSKLAMEFGMNPLVLVAYRQMFATIAIAPCAYWFERKGRPKITKPILFQILLCSLTGATANQVFYYVGLKYSTPTIACALTNVLPAATFVLAVLFRQESVGIKTSPGAAKVMGTVVCVGGAMLLSFYRGQTIQLGESGIHWKYAELMRGGSSTNQGSSIWGSLCLIISSVAWAAWFVIQARVNEKFPAPYTSTALMTFMATIQCGAIAVGVEHKTAAAWSLKSSIRLVGALYAGVACSGVAFCLTSWSIQKKGPLYASVFSPFLLVIVAIFSWAFFQEKLYVGTVVGSLLIVVGLYAVLWGKTKEVKLQQHIEMAAAAEAKLDDCNNKDLEEQSYVVSNATILHKHDESTSPASICEPVQRFRVVGTRTLDSA 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15579969 15583833 + CrPI670011_01g009850.1 Cre01g0985 488530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g0985 398 SUPERFAMILY Multidrug resistance efflux transporter EmrE 43 152 - -
Cre01g0985 398 Pfam EamA-like transporter family 185 324 IPR000620 GO:0016020(InterPro)
Cre01g0985 398 Pfam EamA-like transporter family 11 150 IPR000620 GO:0016020(InterPro)
Cre01g0985 398 SUPERFAMILY Multidrug resistance efflux transporter EmrE 242 328 - -
Cre01g0985 398 PANTHER WAT1-RELATED PROTEIN 11 346 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Cre01g0985 398 Coils Coil 333 353 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0985 Cre-Chr1:15579969 Cre02g1796 Cre-Chr2:31274294 1.70E-117 dispersed
Cre01g0985 Cre-Chr1:15579969 Cre01g0458 Cre-Chr1:3897674 1.90E-60 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g0985 - - - 0.0