Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g0998 ATGGACTCTGGTGATGTTGAGCAATCCTTGCTTCCTAAGCTCCCCGATTCTGATAAGAGGAAATCTCTCCAGGGAAGAAAATCTAACCGTCATGGTAGTTTTTCACATTCAGTAGAAAATAATAATCAACCACAAAATTATGATGTAATATCTCATCAATGTATTGCTGTTTCACAAGTTAGTTTTAGGAAAGTATTTGTTCTTCTCGCGACTTATTTGGGAGGAGGCACGTTTTGTTTTTTCCTTGTTCGGGATCAGATCACTGGCAAGAAAACAAATGGGATTGTTGATGCCATTTACTTTTGTGTTGTAACAATGACCACCGTTGGGTATGGTGATCTTGTTCCTAACAGCATAGTTGCAAAACTACTTGCATGTGCTTATGTCTTCACTGGAATGACTCTTGGTGGGATGATCCTTAGCAAGGCAGCCGATTACATTGTGGAAAAGCAGGAAATTCTTCTGGTTAAGGCAATGTACATGAGGAAAAAGATCAGCTCCAGCGAGATCCTTCAGGAATCTGAGGCTCACAAATTGAAATACAAATTCATTATGACTGGAATCCTCCTTTGGACTCTTGTCTTTGTTGGAACTCTTTTCTTGACTGTGGTTGAGAAGCTAGAGTTCATAGATGCCTTTTATTGCGTTTGTTCCACTATCACGACTCTTGGATTTGGTGATGAGAGCTTCTCTACAACAGCTGGTCGTGTTTTTGCTGTCATTTGGATAATGAGCAGTACCATCTGCTTAGCACAGTTCTTTCTGTACCTTGCAGAATTACACACAGAAAGGAGACAAGAATCACTGGTAAATTGGGTTCTCAGCCGAAGCCTCACGTACTCGGATCTTGAAGAAGCAGACCTTGATCATGATAAAGTAGTAAGCGCTGCAGAATTTGTTATATATAAACTGAAGGAAATGGGGAAGATCAATCAGGAAGACGTTTCTCCCATACTTGAAACTTTTAAGAAGCTTGACATTGATCAATCAGGAAGTTTAACAGAAGCTGATATAGTAACCTCATCGTCGTTGGCTTAA 1038 40.08 MDSGDVEQSLLPKLPDSDKRKSLQGRKSNRHGSFSHSVENNNQPQNYDVISHQCIAVSQVSFRKVFVLLATYLGGGTFCFFLVRDQITGKKTNGIVDAIYFCVVTMTTVGYGDLVPNSIVAKLLACAYVFTGMTLGGMILSKAADYIVEKQEILLVKAMYMRKKISSSEILQESEAHKLKYKFIMTGILLWTLVFVGTLFLTVVEKLEFIDAFYCVCSTITTLGFGDESFSTTAGRVFAVIWIMSSTICLAQFFLYLAELHTERRQESLVNWVLSRSLTYSDLEEADLDHDKVVSAAEFVIYKLKEMGKINQEDVSPILETFKKLDIDQSGSLTEADIVTSSSLA 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15809174 15810355 + CrPI670011_01g009980.1 Cre01g0998 488543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g0998 345 SUPERFAMILY Voltage-gated potassium channels 178 276 - -
Cre01g0998 345 PRINTS Two pore domain K+ channel signature 221 230 IPR003280 GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Cre01g0998 345 PRINTS Two pore domain K+ channel signature 104 132 IPR003280 GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Cre01g0998 345 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 95 286 IPR003280 GO:0005267(InterPro)|GO:0005887(PANTHER)|GO:0009705(PANTHER)|GO:0015271(PANTHER)|GO:0016020(InterPro)|GO:0022841(PANTHER)|GO:0030322(PANTHER)|GO:0071805(InterPro)|GO:0071805(PANTHER)
Cre01g0998 345 Gene3D - 282 343 - -
Cre01g0998 345 Pfam Ion channel 68 148 IPR013099 -
Cre01g0998 345 Pfam Ion channel 190 260 IPR013099 -
Cre01g0998 345 FunFam Calcium-activated outward-rectifying potassium channel 1 59 154 - -
Cre01g0998 345 Gene3D - 157 273 - -
Cre01g0998 345 Gene3D - 57 153 - -
Cre01g0998 345 SUPERFAMILY Voltage-gated potassium channels 59 162 - -
Cre01g0998 345 SUPERFAMILY EF-hand 272 339 IPR011992 -
Cre01g0998 345 ProSitePatterns EF-hand calcium-binding domain. 326 338 IPR018247 -
Cre01g0998 345 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0354 Cre-Chr1:2954113 Cre01g0998 Cre-Chr1:15809174 1.20E-93 dispersed
Cre01g0998 Cre-Chr1:15809174 Cre04g2044 Cre-Chr4:37677977 1.00E-46 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g0998 K05389 - csv:101214791 603.208