Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre01g0998 | ATGGACTCTGGTGATGTTGAGCAATCCTTGCTTCCTAAGCTCCCCGATTCTGATAAGAGGAAATCTCTCCAGGGAAGAAAATCTAACCGTCATGGTAGTTTTTCACATTCAGTAGAAAATAATAATCAACCACAAAATTATGATGTAATATCTCATCAATGTATTGCTGTTTCACAAGTTAGTTTTAGGAAAGTATTTGTTCTTCTCGCGACTTATTTGGGAGGAGGCACGTTTTGTTTTTTCCTTGTTCGGGATCAGATCACTGGCAAGAAAACAAATGGGATTGTTGATGCCATTTACTTTTGTGTTGTAACAATGACCACCGTTGGGTATGGTGATCTTGTTCCTAACAGCATAGTTGCAAAACTACTTGCATGTGCTTATGTCTTCACTGGAATGACTCTTGGTGGGATGATCCTTAGCAAGGCAGCCGATTACATTGTGGAAAAGCAGGAAATTCTTCTGGTTAAGGCAATGTACATGAGGAAAAAGATCAGCTCCAGCGAGATCCTTCAGGAATCTGAGGCTCACAAATTGAAATACAAATTCATTATGACTGGAATCCTCCTTTGGACTCTTGTCTTTGTTGGAACTCTTTTCTTGACTGTGGTTGAGAAGCTAGAGTTCATAGATGCCTTTTATTGCGTTTGTTCCACTATCACGACTCTTGGATTTGGTGATGAGAGCTTCTCTACAACAGCTGGTCGTGTTTTTGCTGTCATTTGGATAATGAGCAGTACCATCTGCTTAGCACAGTTCTTTCTGTACCTTGCAGAATTACACACAGAAAGGAGACAAGAATCACTGGTAAATTGGGTTCTCAGCCGAAGCCTCACGTACTCGGATCTTGAAGAAGCAGACCTTGATCATGATAAAGTAGTAAGCGCTGCAGAATTTGTTATATATAAACTGAAGGAAATGGGGAAGATCAATCAGGAAGACGTTTCTCCCATACTTGAAACTTTTAAGAAGCTTGACATTGATCAATCAGGAAGTTTAACAGAAGCTGATATAGTAACCTCATCGTCGTTGGCTTAA | 1038 | 40.08 | MDSGDVEQSLLPKLPDSDKRKSLQGRKSNRHGSFSHSVENNNQPQNYDVISHQCIAVSQVSFRKVFVLLATYLGGGTFCFFLVRDQITGKKTNGIVDAIYFCVVTMTTVGYGDLVPNSIVAKLLACAYVFTGMTLGGMILSKAADYIVEKQEILLVKAMYMRKKISSSEILQESEAHKLKYKFIMTGILLWTLVFVGTLFLTVVEKLEFIDAFYCVCSTITTLGFGDESFSTTAGRVFAVIWIMSSTICLAQFFLYLAELHTERRQESLVNWVLSRSLTYSDLEEADLDHDKVVSAAEFVIYKLKEMGKINQEDVSPILETFKKLDIDQSGSLTEADIVTSSSLA | 345 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 15809174 | 15810355 | + | CrPI670011_01g009980.1 | Cre01g0998 | 488543 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre01g0998 | 345 | SUPERFAMILY | Voltage-gated potassium channels | 178 | 276 | - | - | |
Cre01g0998 | 345 | PRINTS | Two pore domain K+ channel signature | 221 | 230 | IPR003280 | GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro) | |
Cre01g0998 | 345 | PRINTS | Two pore domain K+ channel signature | 104 | 132 | IPR003280 | GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro) | |
Cre01g0998 | 345 | PANTHER | POTASSIUM CHANNEL, SUBFAMILY K | 95 | 286 | IPR003280 | GO:0005267(InterPro)|GO:0005887(PANTHER)|GO:0009705(PANTHER)|GO:0015271(PANTHER)|GO:0016020(InterPro)|GO:0022841(PANTHER)|GO:0030322(PANTHER)|GO:0071805(InterPro)|GO:0071805(PANTHER) | |
Cre01g0998 | 345 | Gene3D | - | 282 | 343 | - | - | |
Cre01g0998 | 345 | Pfam | Ion channel | 68 | 148 | IPR013099 | - | |
Cre01g0998 | 345 | Pfam | Ion channel | 190 | 260 | IPR013099 | - | |
Cre01g0998 | 345 | FunFam | Calcium-activated outward-rectifying potassium channel 1 | 59 | 154 | - | - | |
Cre01g0998 | 345 | Gene3D | - | 157 | 273 | - | - | |
Cre01g0998 | 345 | Gene3D | - | 57 | 153 | - | - | |
Cre01g0998 | 345 | SUPERFAMILY | Voltage-gated potassium channels | 59 | 162 | - | - | |
Cre01g0998 | 345 | SUPERFAMILY | EF-hand | 272 | 339 | IPR011992 | - | |
Cre01g0998 | 345 | ProSitePatterns | EF-hand calcium-binding domain. | 326 | 338 | IPR018247 | - | |
Cre01g0998 | 345 | MobiDBLite | consensus disorder prediction | 1 | 40 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre01g0354 | Cre-Chr1:2954113 | Cre01g0998 | Cre-Chr1:15809174 | 1.20E-93 | dispersed | |
Cre01g0998 | Cre-Chr1:15809174 | Cre04g2044 | Cre-Chr4:37677977 | 1.00E-46 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre01g0998 | K05389 | - | csv:101214791 | 603.208 |