Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g1029 ATGGCCTCAAAGAGTTCGAAGCCTTCTGTAAAGCAACCTAAGGGGATAATTGGCGTTCAAGCTACGGATTCAGGTGATCTAAAGTCCTTACCTTCACAGACTTCATTGGGAAACAAAATTGGTTCTGTTATCTCTGGAGATGTATTGAACTCTACACAGAAATCCTTGAATCAGTCTACTTTGATTGATTCATCAAAGAGCAAATCCTCAAGTTTAAATCCTAAAGAGTCTACCAAGTCTTGTAATCAGAAAGTCAAAGAAAATTCCTCAAAGTCTGGCTCTAAGACGTTGACAGAAGGAGATCCTGCTCTTAACGGGACTCGGGGCTTAGCGGAGGACTCTATAGATCCTGAGAAGAAAACATCGGAATGTGGGAGTGGGAAGGATAGTTCTGTTTCTGCCAAAGTCAGTGATGGAACAAACAGTATTGCCAAGACTAGTGGAAGTGCGAAAATTAGCGACCGTGTTGAGATGGTTGAGAGTGGCAAGAGCAGCATGTGTCGAGGAAGCACTAGCAGCGACATCAGTGACGAAAGCACCTGTAGCAGCTTTAGTAGTAGTATCAGTAAGCCTCACAAAGCAAATGACTTGAGATGGGAGGCCATCCAAGCTGTACGTGCAAGGGACGGGATATTGGGATTAGGTCATTTTAGACTATTGAAGAGACTGGGATGTGGGGATATCGGAAGCGTCTACTTGTCGGAGTTGAGTGGTACTAAATGTTATTTTGCTATGAAGGTCATGGACAAAGGGTCTCTAGCAAGCCGAAAGAAGTTGCTTCGAGCTCAGACTGAAAGAGAAATATTGCAGTCTCTTGATCATCCATTCCTTCCTACATTATATACTCATTTTGAGACTGATAAGTTCTCATGCTTGGTGATGGAGTTCTGCCCTGGGGGAGACTTGCACACTCTAAGGCAGAGGCAGCCAGGGAAGCATTTTCCCGAGCAGGCGGTGAAATTTTATGTAGCAGAGGTTCTCCTAGCACTTGAGTATCTTCACATGCTTGGGATTGTATACCGGGACCTTAAGCCTGAGAATGTTCTTGTGAGGGAAGATGGACACATAATGCTTTCGGACTTCGATCTTTCATTAAGATGTGCAGTTAGTCCAACATTAGTGAAGGGTTCATGTTCTGAGTCTGAACCCTTGAGAAAGAATTCAGCTTATTGTGTTCAACCGGCTTGTATCGAACCTTCCTGCATCCAGCCATCCTGTGTAGTTCCTACGACATGCTTCTCTCCCCGACTTTTCTCTAGCAAATCAAAGAAGGATAGAAAACCCAAGACTGAAATAGGAAACCAGGTAACGCCATTGCCAGAGCTCATTGCAGAGCCTACGGAGGCGAGATCAATGTCATTTGTTGGTACACACGAGTATTTGGCACCGGAGATCATTAAAGGCGAAGGTCATGGAAGTGCTGTTGACTGGTGGACTTTTGGAATCTTTCTATACGAACTGTTGTTTGGTAAAACTCCTTTTAAGGGATCTGGGAATCGAGCCACGTTGTTCAACGTTGTTGGTCAGCCTTTGCGGTTTCCTGAATCACCCGTTGTCAGTTTTGCTGCAAGGGATCTCATCAGGGGATTGCTTGTCAAGGAACCACAACATAGATTAGCTTACAAACGAGGGGCAACTGAGATCAAGCAACATCCCTTCTTTGAAGGTGTCAACTGGGCATTGATACGTTGCGCTTCGCCACCAGAAGTACCAAAGCCTGTTGAGATTGAGAGGATACCCTCACCAGCACCTCCAGCGAGTGGAAAAGCTGTAATGGCTAGACCTGGTCCCGATTCCAAATCGTCTGATAATTATCTCGAGTTTGATTTCTTTTAG 1836 44.99 MASKSSKPSVKQPKGIIGVQATDSGDLKSLPSQTSLGNKIGSVISGDVLNSTQKSLNQSTLIDSSKSKSSSLNPKESTKSCNQKVKENSSKSGSKTLTEGDPALNGTRGLAEDSIDPEKKTSECGSGKDSSVSAKVSDGTNSIAKTSGSAKISDRVEMVESGKSSMCRGSTSSDISDESTCSSFSSSISKPHKANDLRWEAIQAVRARDGILGLGHFRLLKRLGCGDIGSVYLSELSGTKCYFAMKVMDKGSLASRKKLLRAQTEREILQSLDHPFLPTLYTHFETDKFSCLVMEFCPGGDLHTLRQRQPGKHFPEQAVKFYVAEVLLALEYLHMLGIVYRDLKPENVLVREDGHIMLSDFDLSLRCAVSPTLVKGSCSESEPLRKNSAYCVQPACIEPSCIQPSCVVPTTCFSPRLFSSKSKKDRKPKTEIGNQVTPLPELIAEPTEARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPESPVVSFAARDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCASPPEVPKPVEIERIPSPAPPASGKAVMARPGPDSKSSDNYLEFDFF 611
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16858212 16860517 - CrPI670011_01g010290.1 Cre01g1029 488574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g1029 611 MobiDBLite consensus disorder prediction 56 174 - -
Cre01g1029 611 MobiDBLite consensus disorder prediction 56 101 - -
Cre01g1029 611 ProSitePatterns Serine/Threonine protein kinases active-site signature. 338 350 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre01g1029 611 Gene3D Transferase(Phosphotransferase) domain 1 448 572 - -
Cre01g1029 611 MobiDBLite consensus disorder prediction 1 41 - -
Cre01g1029 611 Gene3D Transferase(Phosphotransferase) domain 1 301 369 - -
Cre01g1029 611 Gene3D Phosphorylase Kinase; domain 1 215 300 - -
Cre01g1029 611 MobiDBLite consensus disorder prediction 25 41 - -
Cre01g1029 611 FunFam Serine/threonine-protein kinase AGC1-7 447 572 - -
Cre01g1029 611 MobiDBLite consensus disorder prediction 579 604 - -
Cre01g1029 611 CDD STKc_phototropin_like 216 577 - -
Cre01g1029 611 FunFam Serine/threonine-protein kinase D6PK-like 215 300 - -
Cre01g1029 611 FunFam serine/threonine-protein kinase D6PK-like 301 368 - -
Cre01g1029 611 Pfam Protein kinase domain 218 367 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre01g1029 611 Pfam Protein kinase domain 451 554 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre01g1029 611 PANTHER FLIPPASE KINASE 1-RELATED 84 574 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cre01g1029 611 SMART serkin_6 217 554 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre01g1029 611 ProSiteProfiles Protein kinase domain profile. 217 554 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre01g1029 611 MobiDBLite consensus disorder prediction 126 149 - -
Cre01g1029 611 SUPERFAMILY Protein kinase-like (PK-like) 193 582 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1029 Cre-Chr1:16858212 Cre04g0169 Cre-Chr4:4533337 3.30E-152 dispersed
Cre05g0071 Cre-Chr5:906286 Cre01g1029 Cre-Chr1:16858212 1.00E-189 transposed
Cre10g1529 Cre-Chr10:29217918 Cre01g1029 Cre-Chr1:16858212 6.60E-200 transposed
Cre01g1029 Cre-Chr1:16858212 Cre04g1741 Cre-Chr4:35499566 2.60E-226 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63816 PF00069 Pkinase 9.50E-37 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g1029 K08286 - csv:101213662 1095.88