Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g1089 ATGTTAGAACGTCCACCACCCAACCGCCATCAATGGGGTAATCATTTAAAACTCTCCAAACGGCCAATAAATGGGAAGTTCCAAAGAAAATTTGAACCTATAGCTACTACAACCTTCAATTCAGTTTGGGTCATCCTTACAAGGAAGCTGATAGATCAGATTTTGTTCATTACAGATCTGGTATTTCCCAGCAGGATGAGGCACAGTGGTTGCGTTGCCAAGAGAATTGTTTACACTTCTTTATGTTATATCTTTCTGATGTCCATGAGCTCGACTTTCAGGAACATACCCACTTTTGGAAACGAATCAGATTACTTGGCTCTACTTGACTTGAAAAGAAGAGTACTCAATGACCCACTCAAAATCATGAGCTCTTGGAATGATTCCATGCATTTTTGTGAGTGGGTTGGTGTTACTTGCAGTATCACCATTAGAAGAGTAATTGGGTTGAACTTGGAAGCTCGACAACTGACTGGTTCAATACCATCTTCTTTAGGAAATCTTACTCATCTCACTGAAATCAGATTGGGAGACAACAACTTCCATGGCCCAATAGCCCAAGAGTTTGGTAAATTATTACGACTGCGCCATCTCAATTTATCATTCAATAACTTTAACGGTGAGATTGCAACGAACATAAGTCATTGTACTAAGCTGCTTGTTTTGGAGCTGAGTTTTAATGAGCTTGTTGGTCAGATTCCACATCAGTTCTTTACATTAAGCAAGTTGGAACGACTTGGGTTTGGTGGTAACAATCTGGTCGGAACCATCCCACCTTGGATAGGAAATTTTTCTTCACTATTTCGTTTGTCATTTGCACAGAACAATTTTCAAGGAAGTATTCCTAGTGAACTAGGACGCCTATCTAGATTGGAAATGTTCACAGTTTATGGAAACTATTTGACAGAATTGGTGAGGTTCAATTTTGATGACAACAGACTTGGAAGTGGGAAAGTTCATGACTTAAATTTAATCAGGTCTTTGACTAATTGTACTAGTCTAAGCGTTTTGGGTCTTTCTGGGAATCGTTTTGGAGGAGCATTACCTCTATCAATTACCAACCTTTCAAACCAGCTGACAATACTAACCTTGGGTAGAAATTTGTTAAGTGGAGGCATTCCTGTGGGGATTGGAAACTTGATTAACTTACAAGTTCTTGGAGTAGAAGGTAACAATCTGAATGGTAGTGTCCCTTCCAATATTGGGAAGCTTCATAAGTTGTCTGTACTTAATTTGAACAATAACAAGTTAGCTGGAACAATTCCATCCTCCATTGGTAACTTATCTTCAGTGACCAAGCTTTTCATGGAGGATAATAGGCTAGAGGGAAGTATACCACCAAGCTTGGGACAATGCAAAAGCCTCCAAGCCCTTGACCTATCTGGTAACAACCTAAGTGGGACCATACCAAAGGAAGTTCTCAGTCTCTCTTCCCTTTCAATCTATTTGGCCTTAAATCACAACACACTTACTGGACCATTGCCACATGAAGTTGGTGATTTAGTTGGTTTAACATTGTTAGATGTATCACAGAATAAATTATCAGGTGATATTCCTAGCGACCTTGGTAAATGTATTAGCATGGTACACTTGTATTTGGGAGGTAACCAATTTGAGAGAACAATTCCTCAGTCTTTGAAAGCCTTGAAAGGTAGTTTTGGTTCCGTGTATAAAGGTGTTCTTTTGAATGATAAATCAATTGTCGCTGTTAAGGTTCTTAACCTTAGACAAAATGGTGCTTCCAAGAGTTTTGTTGATGAATGCAAAGCTCTCACGAGCATACGACATCGAAATCTCCTTAAGATCGTAACTTCTTGCTTGAGTACGGATGAAAAAGATAATGAATTCAAAGCTATAGTATTTGATTTCATGTCCAATGGAAACCTGGACGGTTGGCTTCACCCTACACATATTGAGGAGAATAAAATAAAATTGAGCTTTATTCAAAGATTGAATATTGCTATTGATGTTGCCAATGCATTAGATTATCTCCATAATCATTGTGAAACACCCATCGTTCATTGTGATCTAAAGCCTAGCAATGTGTTGTTGGATGATGATATGGTAGCCCATGTTGGGGACTTCGGGTTAGCTAGATTCATCTTTGAAGGATCAGATCAATCTTCTTATAAACAAACCATGTCAATTGCACTTAAGGATTCTATTGGATGTATTCCTCCAGAGTACGGAACCGGTGGCAACATTTCCATTGAAGGAGATATCTTTAGCTATGGAATTTTACTATTGGAGATGTTCACTGGAAAAAGACCCACTGACAACTTGTTTAGTGATGGTGTGGATATTCATCCATTCACGGCAATGGCATTGCCTCATGGTGTCTTGGACATAACTGATCCTTCTTTGCTATCTGAAGAGTCATGCCAACAAGAAGAAGAGAATGAAGAAAAAATACAAACAATAGCAATAATGAGTGAGGAAGATCATACAGATATTGAGCAAAGAAGGATGGAAGAACACCTAGTCTCAATAATGAGAACTGGCCTAAGAAGGCAAGCTAACATTGTCCAACAAGATTTTCAAGAACTTGCAGGTATTGCTTAA 2562 38.72 MLERPPPNRHQWGNHLKLSKRPINGKFQRKFEPIATTTFNSVWVILTRKLIDQILFITDLVFPSRMRHSGCVAKRIVYTSLCYIFLMSMSSTFRNIPTFGNESDYLALLDLKRRVLNDPLKIMSSWNDSMHFCEWVGVTCSITIRRVIGLNLEARQLTGSIPSSLGNLTHLTEIRLGDNNFHGPIAQEFGKLLRLRHLNLSFNNFNGEIATNISHCTKLLVLELSFNELVGQIPHQFFTLSKLERLGFGGNNLVGTIPPWIGNFSSLFRLSFAQNNFQGSIPSELGRLSRLEMFTVYGNYLTELVRFNFDDNRLGSGKVHDLNLIRSLTNCTSLSVLGLSGNRFGGALPLSITNLSNQLTILTLGRNLLSGGIPVGIGNLINLQVLGVEGNNLNGSVPSNIGKLHKLSVLNLNNNKLAGTIPSSIGNLSSVTKLFMEDNRLEGSIPPSLGQCKSLQALDLSGNNLSGTIPKEVLSLSSLSIYLALNHNTLTGPLPHEVGDLVGLTLLDVSQNKLSGDIPSDLGKCISMVHLYLGGNQFERTIPQSLKALKGSFGSVYKGVLLNDKSIVAVKVLNLRQNGASKSFVDECKALTSIRHRNLLKIVTSCLSTDEKDNEFKAIVFDFMSNGNLDGWLHPTHIEENKIKLSFIQRLNIAIDVANALDYLHNHCETPIVHCDLKPSNVLLDDDMVAHVGDFGLARFIFEGSDQSSYKQTMSIALKDSIGCIPPEYGTGGNISIEGDIFSYGILLLEMFTGKRPTDNLFSDGVDIHPFTAMALPHGVLDITDPSLLSEESCQQEEENEEKIQTIAIMSEEDHTDIEQRRMEEHLVSIMRTGLRRQANIVQQDFQELAGIA 853
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19507503 19511036 + CrPI670011_01g010890.1 Cre01g1089 488634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g1089 853 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 624 842 - -
Cre01g1089 853 Pfam Leucine rich repeat 406 465 IPR001611 GO:0005515(InterPro)
Cre01g1089 853 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 139 313 - -
Cre01g1089 853 SUPERFAMILY Protein kinase-like (PK-like) 550 764 IPR011009 -
Cre01g1089 853 PANTHER OS04G0122200 PROTEIN 550 818 IPR051809 -
Cre01g1089 853 Pfam Protein tyrosine and serine/threonine kinase 550 761 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre01g1089 853 Gene3D Ribonuclease Inhibitor 316 480 IPR032675 -
Cre01g1089 853 Gene3D Ribonuclease Inhibitor 215 315 IPR032675 -
Cre01g1089 853 Gene3D Transferase(Phosphotransferase) domain 1 625 845 - -
Cre01g1089 853 Gene3D Phosphorylase Kinase; domain 1 555 624 - -
Cre01g1089 853 SUPERFAMILY L domain-like 358 596 - -
Cre01g1089 853 ProSiteProfiles Protein kinase domain profile. 542 827 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre01g1089 853 ProSitePatterns Serine/Threonine protein kinases active-site signature. 672 684 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre01g1089 853 SMART serkin_6 550 847 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre01g1089 853 Pfam Leucine Rich Repeat 242 264 IPR001611 GO:0005515(InterPro)
Cre01g1089 853 Pfam Leucine Rich Repeat 504 525 IPR001611 GO:0005515(InterPro)
Cre01g1089 853 Pfam Leucine Rich Repeat 382 404 IPR001611 GO:0005515(InterPro)
Cre01g1089 853 Pfam Leucine Rich Repeat 194 216 IPR001611 GO:0005515(InterPro)
Cre01g1089 853 Gene3D Ribonuclease Inhibitor 104 214 IPR032675 -
Cre01g1089 853 Gene3D Ribonuclease Inhibitor 481 554 IPR032675 -
Cre01g1089 853 SUPERFAMILY L domain-like 101 356 - -
Cre01g1089 853 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 327 551 - -
Cre01g1089 853 SMART LRR_typ_2 380 403 IPR003591 -
Cre01g1089 853 SMART LRR_typ_2 428 452 IPR003591 -
Cre01g1089 853 SMART LRR_typ_2 192 216 IPR003591 -
Cre01g1089 853 SMART LRR_typ_2 501 525 IPR003591 -
Cre01g1089 853 SMART LRR_typ_2 240 264 IPR003591 -
Cre01g1089 853 SMART LRR_typ_2 453 476 IPR003591 -
Cre01g1089 853 SMART LRR_typ_2 404 427 IPR003591 -
Cre01g1089 853 Pfam Leucine rich repeat N-terminal domain 102 141 IPR013210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1089 Cre-Chr1:19507503 Cre10g2304 Cre-Chr10:37296883 5.40E-113 dispersed
Cre01g1089 Cre-Chr1:19507503 Cre10g2303 Cre-Chr10:37283586 2.30E-119 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63818 PF07714 PK_Tyr_Ser-Thr 3.00E-35 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g1089 - - - 0.0