Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g1119 ATGGCCAATCTCTCTAATTTCCATGGAATAATCCACCATAATCCTTCTCTTCCTTTCATGAATCCAGAAGGCTCAGCTTTTGATTTTGGAGAGCTGGAAGAAGCCATAGTTTTGCAGGGAGTTAAGCTTGGAAATGATGAACCCAAATCTCCACATTTTCTAACAGGAAGGCCTGCTGCTACTCTTGAAATGTTCCCTTCTTGGCCAATAAGGTTTCAACAAACCCCAACATTGGGAGGAGGTTCAAAGTCAGAGAGTACAGATTCAGGATCAGCAAATATGAACAATACTCTCACAAGCAAAACAGAGTTGGAAATGGAACCTGAATCACCAATAAGTAGAAGAGGTTGTTCTTCAAATCAAGGATTATTTGATCAAAATCATCATCTTCTTCAACTCCAACATCTTCAATCAGAGTTTGAAGATGATGCCTTGAGAACACAACCATCATTACACCAAAATCAATCTCCTCCCAAAGAAAAGAGGAAAGGAGCTGGTTCAACATCAGAGAGACAGCTTGATGCCAAGACACTGAGAAGATTAGCTCAAAACAGAGAAGCTGCAAGAAAGAGCCGACTGAGGAAGAAGGCTTATATTCAACAGCTAGAGTCTAGTAGAATCAAGCTCTCTCAGCTTGAACAAGATCTCCATAGAGCACGTTCTCAGGGATTGTTTCTAGGTGGTTGTGGTGGTGTAATGGGTGGCAATATCAGCTCAGGAGCTGCAATATTTGACATGGAGTATGCGCGGTGGCTAGACGAGGACCACCGTTTGATGGCGGAGCTGCGGGCGGCGTTGCAAGGGCATCTCCCAGACGGCGATCTCCGAGCAATAGTAGAGAGTTACATCTCTCACTACGACGAGATATTTCACCTGAAAGGCGTGGCAGCGAAATCGGACGTGTTTCATTTGATCACAGGAATGTGGATGACTCCGGCGGAGCGTTGCTTCCTGTGGATCGGCGGATTCCGGCCATCAAAGCTCATAGAGATGCTAATTCCGCAATTAGACACATTAACAGAGCAACAAGCAATGGGAATATGTAATTTGCAAAGATCTTCACAAGAAACAGAGGATGCTCTTTATCAGGGGCTTGAGCAGCTGCAGCATTCTCTCATTATCACCATCGCCGGCACCGCTGTCGTCGACGGCATTAACCATATGGCCCTCGCCGCCGGCAAGCTCTCCAATCTTGAAGGCTTCATCCGCCAGGCTGATATGTTGAGACAACAAACGCTTCATCAATTACATCGAATATTGACAATCCGACAGGCAGCTCGATGTTTCGTGGTAATTGGAGAGTATTATGGAAGACTTCGAGCTCTTAGTTCCTTGTGGGTCTCTCGACCGAGAGAGAGCAGCTGCTTGAATGATGAAAATTCATGCCAAACAACAACAGAGCTACAAATGATTCAGAGTTCCCACACCCATTTCCCAAACTTTTGA 1446 45.37 MANLSNFHGIIHHNPSLPFMNPEGSAFDFGELEEAIVLQGVKLGNDEPKSPHFLTGRPAATLEMFPSWPIRFQQTPTLGGGSKSESTDSGSANMNNTLTSKTELEMEPESPISRRGCSSNQGLFDQNHHLLQLQHLQSEFEDDALRTQPSLHQNQSPPKEKRKGAGSTSERQLDAKTLRRLAQNREAARKSRLRKKAYIQQLESSRIKLSQLEQDLHRARSQGLFLGGCGGVMGGNISSGAAIFDMEYARWLDEDHRLMAELRAALQGHLPDGDLRAIVESYISHYDEIFHLKGVAAKSDVFHLITGMWMTPAERCFLWIGGFRPSKLIEMLIPQLDTLTEQQAMGICNLQRSSQETEDALYQGLEQLQHSLIITIAGTAVVDGINHMALAAGKLSNLEGFIRQADMLRQQTLHQLHRILTIRQAARCFVVIGEYYGRLRALSSLWVSRPRESSCLNDENSCQTTTELQMIQSSHTHFPNF 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 20413933 20419022 + CrPI670011_01g011190.1 Cre01g1119 488664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g1119 481 MobiDBLite consensus disorder prediction 148 174 - -
Cre01g1119 481 ProSiteProfiles DOG1 domain profile. 241 449 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cre01g1119 481 MobiDBLite consensus disorder prediction 73 106 - -
Cre01g1119 481 Pfam bZIP transcription factor 175 216 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre01g1119 481 CDD bZIP_HBP1b-like 176 226 - -
Cre01g1119 481 MobiDBLite consensus disorder prediction 156 174 - -
Cre01g1119 481 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 179 194 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre01g1119 481 MobiDBLite consensus disorder prediction 73 121 - -
Cre01g1119 481 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 174 218 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre01g1119 481 PANTHER TRANSCRIPTION FACTOR TGA9 127 453 - -
Cre01g1119 481 FunFam BZIP family transcription factor 175 224 - -
Cre01g1119 481 SMART brlzneu 172 238 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre01g1119 481 Coils Coil 195 222 - -
Cre01g1119 481 SUPERFAMILY Leucine zipper domain 176 218 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre01g1119 481 Gene3D - 175 224 - -
Cre01g1119 481 Pfam Seed dormancy control 259 333 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1119 Cre-Chr1:20413933 Cre07g1303 Cre-Chr7:27361399 2.20E-71 dispersed
Cre05g2856 Cre-Chr5:39247209 Cre01g1119 Cre-Chr1:20413933 8.50E-89 transposed
Cre08g0479 Cre-Chr8:16493460 Cre01g1119 Cre-Chr1:20413933 8.30E-86 transposed
Cre08g1009 Cre-Chr8:23189625 Cre01g1119 Cre-Chr1:20413933 1.50E-90 transposed
Cre10g1750 Cre-Chr10:31911664 Cre01g1119 Cre-Chr1:20413933 1.40E-80 transposed
Cre10g1850 Cre-Chr10:33070315 Cre01g1119 Cre-Chr1:20413933 1.20E-91 transposed
Cre01g1119 Cre-Chr1:20413933 Cre02g2521 Cre-Chr2:38496260 4.10E-142 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53013 PF14144 DOG1 7.30E-31 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g1119 K14431 - csv:101204604 893.649