Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre01g1119 | ATGGCCAATCTCTCTAATTTCCATGGAATAATCCACCATAATCCTTCTCTTCCTTTCATGAATCCAGAAGGCTCAGCTTTTGATTTTGGAGAGCTGGAAGAAGCCATAGTTTTGCAGGGAGTTAAGCTTGGAAATGATGAACCCAAATCTCCACATTTTCTAACAGGAAGGCCTGCTGCTACTCTTGAAATGTTCCCTTCTTGGCCAATAAGGTTTCAACAAACCCCAACATTGGGAGGAGGTTCAAAGTCAGAGAGTACAGATTCAGGATCAGCAAATATGAACAATACTCTCACAAGCAAAACAGAGTTGGAAATGGAACCTGAATCACCAATAAGTAGAAGAGGTTGTTCTTCAAATCAAGGATTATTTGATCAAAATCATCATCTTCTTCAACTCCAACATCTTCAATCAGAGTTTGAAGATGATGCCTTGAGAACACAACCATCATTACACCAAAATCAATCTCCTCCCAAAGAAAAGAGGAAAGGAGCTGGTTCAACATCAGAGAGACAGCTTGATGCCAAGACACTGAGAAGATTAGCTCAAAACAGAGAAGCTGCAAGAAAGAGCCGACTGAGGAAGAAGGCTTATATTCAACAGCTAGAGTCTAGTAGAATCAAGCTCTCTCAGCTTGAACAAGATCTCCATAGAGCACGTTCTCAGGGATTGTTTCTAGGTGGTTGTGGTGGTGTAATGGGTGGCAATATCAGCTCAGGAGCTGCAATATTTGACATGGAGTATGCGCGGTGGCTAGACGAGGACCACCGTTTGATGGCGGAGCTGCGGGCGGCGTTGCAAGGGCATCTCCCAGACGGCGATCTCCGAGCAATAGTAGAGAGTTACATCTCTCACTACGACGAGATATTTCACCTGAAAGGCGTGGCAGCGAAATCGGACGTGTTTCATTTGATCACAGGAATGTGGATGACTCCGGCGGAGCGTTGCTTCCTGTGGATCGGCGGATTCCGGCCATCAAAGCTCATAGAGATGCTAATTCCGCAATTAGACACATTAACAGAGCAACAAGCAATGGGAATATGTAATTTGCAAAGATCTTCACAAGAAACAGAGGATGCTCTTTATCAGGGGCTTGAGCAGCTGCAGCATTCTCTCATTATCACCATCGCCGGCACCGCTGTCGTCGACGGCATTAACCATATGGCCCTCGCCGCCGGCAAGCTCTCCAATCTTGAAGGCTTCATCCGCCAGGCTGATATGTTGAGACAACAAACGCTTCATCAATTACATCGAATATTGACAATCCGACAGGCAGCTCGATGTTTCGTGGTAATTGGAGAGTATTATGGAAGACTTCGAGCTCTTAGTTCCTTGTGGGTCTCTCGACCGAGAGAGAGCAGCTGCTTGAATGATGAAAATTCATGCCAAACAACAACAGAGCTACAAATGATTCAGAGTTCCCACACCCATTTCCCAAACTTTTGA | 1446 | 45.37 | MANLSNFHGIIHHNPSLPFMNPEGSAFDFGELEEAIVLQGVKLGNDEPKSPHFLTGRPAATLEMFPSWPIRFQQTPTLGGGSKSESTDSGSANMNNTLTSKTELEMEPESPISRRGCSSNQGLFDQNHHLLQLQHLQSEFEDDALRTQPSLHQNQSPPKEKRKGAGSTSERQLDAKTLRRLAQNREAARKSRLRKKAYIQQLESSRIKLSQLEQDLHRARSQGLFLGGCGGVMGGNISSGAAIFDMEYARWLDEDHRLMAELRAALQGHLPDGDLRAIVESYISHYDEIFHLKGVAAKSDVFHLITGMWMTPAERCFLWIGGFRPSKLIEMLIPQLDTLTEQQAMGICNLQRSSQETEDALYQGLEQLQHSLIITIAGTAVVDGINHMALAAGKLSNLEGFIRQADMLRQQTLHQLHRILTIRQAARCFVVIGEYYGRLRALSSLWVSRPRESSCLNDENSCQTTTELQMIQSSHTHFPNF | 481 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 20413933 | 20419022 | + | CrPI670011_01g011190.1 | Cre01g1119 | 488664 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre01g1119 | 481 | MobiDBLite | consensus disorder prediction | 148 | 174 | - | - | |
Cre01g1119 | 481 | ProSiteProfiles | DOG1 domain profile. | 241 | 449 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
Cre01g1119 | 481 | MobiDBLite | consensus disorder prediction | 73 | 106 | - | - | |
Cre01g1119 | 481 | Pfam | bZIP transcription factor | 175 | 216 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre01g1119 | 481 | CDD | bZIP_HBP1b-like | 176 | 226 | - | - | |
Cre01g1119 | 481 | MobiDBLite | consensus disorder prediction | 156 | 174 | - | - | |
Cre01g1119 | 481 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 179 | 194 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre01g1119 | 481 | MobiDBLite | consensus disorder prediction | 73 | 121 | - | - | |
Cre01g1119 | 481 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 174 | 218 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre01g1119 | 481 | PANTHER | TRANSCRIPTION FACTOR TGA9 | 127 | 453 | - | - | |
Cre01g1119 | 481 | FunFam | BZIP family transcription factor | 175 | 224 | - | - | |
Cre01g1119 | 481 | SMART | brlzneu | 172 | 238 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre01g1119 | 481 | Coils | Coil | 195 | 222 | - | - | |
Cre01g1119 | 481 | SUPERFAMILY | Leucine zipper domain | 176 | 218 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre01g1119 | 481 | Gene3D | - | 175 | 224 | - | - | |
Cre01g1119 | 481 | Pfam | Seed dormancy control | 259 | 333 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre01g1119 | Cre-Chr1:20413933 | Cre07g1303 | Cre-Chr7:27361399 | 2.20E-71 | dispersed | |
Cre05g2856 | Cre-Chr5:39247209 | Cre01g1119 | Cre-Chr1:20413933 | 8.50E-89 | transposed | |
Cre08g0479 | Cre-Chr8:16493460 | Cre01g1119 | Cre-Chr1:20413933 | 8.30E-86 | transposed | |
Cre08g1009 | Cre-Chr8:23189625 | Cre01g1119 | Cre-Chr1:20413933 | 1.50E-90 | transposed | |
Cre10g1750 | Cre-Chr10:31911664 | Cre01g1119 | Cre-Chr1:20413933 | 1.40E-80 | transposed | |
Cre10g1850 | Cre-Chr10:33070315 | Cre01g1119 | Cre-Chr1:20413933 | 1.20E-91 | transposed | |
Cre01g1119 | Cre-Chr1:20413933 | Cre02g2521 | Cre-Chr2:38496260 | 4.10E-142 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53013 | PF14144 | DOG1 | 7.30E-31 | No_clan | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre01g1119 | K14431 | - | csv:101204604 | 893.649 |