Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g1132 ATGGTTTATGTTAACCCCTTTGAAGATATGGGTTTGAGAAATCATATGGCAGATGATAACATCTTTTGTCTTCAATCCCCAACTTTCATAGAATGGCTTAAACCACACAACCCTTCTTCTCCTTCTCCCTCCATCTCTCTCTCGTCTTCGTCTTCGTCTATCTCCGACCGAGATTTAATCTCTCAGACGAGCGTCCAATGCGTTAATACAGGGTTAGTTCCTGATCAACAACATGAATTTTTCGTGTCGTCCCGATGCCTGCCTTTGTTCACCGAGACGGAGGCCATGCCGAAGAACGACAAGGAATTAGGGGCTCGAGCTCAAGATCATGAAAGGAAATATTTGGGAATTAAAGAGGAGAATGAAGATATGGAGAAAGTTGAAGTGGGTTTGCACATTGGGCTTCCAAATGTTGGTGATGGGAAGAACTTGAATGTTTGTATAAAGAAAGAAGAAATAAGCTGCCTGAAGAAAAGCTTCTCTAATTTTAACAATCAAGGAAGGTTTTGGATCCCCACACAGGCTCAGATCCTTGTTGGTCCTATGCAATTTACTTGCTCCATCTGCAACAAGTCATTTAATAGATACAATAACATGCAGATGCACATGTGGGGGCATGGATCTGAGTACAGAAAAGGGCCAGAATCTCTTAGAGGAACACAGCCAGCAGCAATGCTAAGGCTTCCATGTTATTGCTGTGCTCAGGGCTGCAAGAACAACATTAACCATCCAAGAGCCAAGCCATTGAAAGACTTCAGAACCCTTCAAACCCATTACAAAAGAAAGCATGGTTCCAAGCCATTTATGTGTAGAAAATGTGGCAAAACTTTGGCTGTTAAAGGAGATTGGAGAACCCATGAAAAAAATTGTGGTAAGCTTTGGTATTGCAGCTGTGGCTCAGATTTCAAACACAAAAGATCTCTTAAAGATCACATCAGATCCTTTGGCAAAGGCCACTCCCCATGCTCCTCTCTTGATGATGAATGCCTCACTGGGTCTGATCAAGAAGATCACTTCACTTAA 1023 42.42 MVYVNPFEDMGLRNHMADDNIFCLQSPTFIEWLKPHNPSSPSPSISLSSSSSSISDRDLISQTSVQCVNTGLVPDQQHEFFVSSRCLPLFTETEAMPKNDKELGARAQDHERKYLGIKEENEDMEKVEVGLHIGLPNVGDGKNLNVCIKKEEISCLKKSFSNFNNQGRFWIPTQAQILVGPMQFTCSICNKSFNRYNNMQMHMWGHGSEYRKGPESLRGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGSKPFMCRKCGKTLAVKGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHIRSFGKGHSPCSSLDDECLTGSDQEDHFT 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 21429134 21431606 + CrPI670011_01g011320.1 Cre01g1132 488677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g1132 340 Gene3D Classic Zinc Finger 183 206 - -
Cre01g1132 340 ProSiteProfiles Zinc finger C2H2 type domain profile. 184 211 IPR013087 -
Cre01g1132 340 FunFam Zinc finger protein WIP2 237 319 - -
Cre01g1132 340 SUPERFAMILY beta-beta-alpha zinc fingers 170 207 IPR036236 -
Cre01g1132 340 Gene3D Classic Zinc Finger 246 325 - -
Cre01g1132 340 PANTHER ZINC FINGER PROTEIN WIP2 27 327 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(PANTHER)|GO:0010468(InterPro)|GO:0048856(PANTHER)
Cre01g1132 340 Coils Coil 107 127 - -
Cre01g1132 340 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 267 291 - -
Cre01g1132 340 SMART c2h2final6 231 263 IPR013087 -
Cre01g1132 340 SMART c2h2final6 184 206 IPR013087 -
Cre01g1132 340 SMART c2h2final6 268 288 IPR013087 -
Cre01g1132 340 Pfam Zinc finger, C2H2 type 184 203 IPR013087 -
Cre01g1132 340 ProSitePatterns Zinc finger C2H2 type domain signature. 186 206 IPR013087 -
Cre01g1132 340 MobiDBLite consensus disorder prediction 317 340 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1132 Cre-Chr1:21429134 Cre10g1839 Cre-Chr10:32963284 8.00E-84 dispersed
Cre01g1132 Cre-Chr1:21429134 Cre02g2631 Cre-Chr2:39577417 2.30E-83 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53014 None None None None Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g1132 - - - 0.0