Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g1186 ATGTCTCGCCGAGGCAGTGGCGGGGGCGGGGGCGGCGGTCGTGGTTCAGGTGGTCGTGGGGGACAGCCGTCTCCGGCTATATCTCGCGGCGGCGGTGGCAGAGGTGGACGAGGCGGTGGAGGGAGAGATGGAGGTAGAGTAGGTCATCCAGCTTCTCAGCAGTTTCCTTCTTCGACTCCTCAGCCTACTCCGGTTGCTACCCCTCCTCCTCCCCAGACTTCTACGGGAGCATCTTCTTCATCCTCGTCAGGTACTGCTACTCACTCACAGCCCGAGGTTTCGAGGATTGAGGCACAAGTGGAGAAGATGACATTGACGCCGCAGAAAGTTCCGCCGTCTTCATCTAAAGATTTGGCTGTGGCGAAGAGGCCGGGATATGGAACCATTGGGCACAAAGTTGTTGTTCGAGCTAATCATTTTCTGGTTCATGTTGCAGACAAAGATCTCTACCATTACGATGTTTCCATTACACCTGAGGTTACATCCAAAAAGGTCTGCCGAGAAATTATAGACCAGCTTGCAAAAATGTATAGAGAATCTCATTTGGGTGGAAGATATATAGCATATGATGGTGGAAAAAGTGTTTATGTTGCTGGTCAACTTCCATTTTCGTCCAAAGAGTTCATGATTAAATTAGTCCGTAAAGATGATGCTGGGTCTTCCCAACCAACAAGGAAAGAACGCGAGTTCAAAGTGTCTATCAAATTCGCTTCCAAGCCAGACCTCCATCATCTACAACAGTTTTTACATGGACGGCAGCGAGATGCTCCTCAGGAGACTATACAAGTTCTTGATGTTGTTTTGAGAACAAAACCATCTTTCAAATACACAGTTGTTGGAAGGTCTTTTTTCTCGCTTACTTTGGGGGAACCAGGTGAACTGGGTAATGGTGTTGAGTACTGGAGGGGATATTACCAAAGTCTACGACCTGTACAAATGGGTCTCTCTTTGAATATAGATGTGTCAGCTAGGTCATTTTATGAACCAATATGTGTGACAGACTATGTTGCTAAACACTTCAACCTAAGAAATTTCTCGAAGCCAATATCTGATCAGGATTGTCGCAAGATCCGAAGGGTACTTAAAGGTGTGAAGGTGGCATTAACGTGTAGGGAGCATGCCAGGACCTACAAAATTACTGGGATATCATCAGAGCCTGTAAACAGATTAATGTTCACTCTTGATGATCAGAGAACCCGAATCTCTGTTGCACAATACTTTCGTGAAAAATATGGTGTTGTGCTCAAATTTCCATCTCTACCGGCTATACAAGCTGGTAATGATGCGAAGCCCATCTATCTGCCTATGGAGGTTTGTAGGATTGTTGGTGGGCAAAGATATACCAAAAAATTGAATGAACGCCAAGTAACTGAGATGTTAAGAGCGACTTGTCAGAGGCCTTTAGACAGGGCAAACAGTATAAAGAAGATGGTTGAAAAGAACGATTATTCTAAAGATGAAACTGTTACGGATTTTGGCATTAATGTTGTACAACAGTTATGTGATGTTGATGCTCGTGTTTTGCCGTCCCCAATGCTCAAATATCATGAAACTGGCAAAGAATCGAGAGTAGATCCAAGGATGGGTCAATGGAATATGATCAATAAGAAAATGATCAATGGTGGTAGAGTTGATTATTGGGGCTGCGTGAACTTCTCTTCACGGTTGGATCCAGGCCTGCCATCCGAATTTTGCCACCAGTTGGTTAGCATGTGCAATAGCAAAGGAATGGTTTTCAACCCTACTCCGCTGTTTCCTGTACGCACTGCACATGCAAATCAAATTGATGGTGTCCTTAGAGACATTCATAGTCAGTCTGTAAAAAGTCTGGGAGCCCAGGGCAAGTCTCTTCAGTTGCTCATAATCATTTTACCTGATGTTTCTGGTTCCTATGGGAAGATCAAAAGGATATGTGAGACTGAGCTTGGAATTGTTTCACAATGTTGCCAGCCTAGGCAGGCGCAAAAGCTAAACAAGCAGTACTTTGAAAATGTGGCCCTTAAAATTAATGTTAAGGTTGGGGGAAGAAACAATGTCCTTAATGATGCTATTCAGCGAAGAATTCCTCTTGTTACGGATCGGCCTACAATAATCATTGGAGCAGATGTAACACATCCACAACCAGGAGAGGACTCCAGTGCTTCAATAGCAGCTGTTGTTGCCTCTATGGACTGGCCTGAGGTAACGAAGTATAGAGGAATCGTTTCAGCTCAGGCTCACCGTGAAGAAATTATACAAGATTTGTACAAAGAGAGTCAAGATCCTCAGAAAGGATTGGTGCGTGCGGGAATGATTAGGGAGCTGTTCATTGCTTTTAGAAGGTCAACGAATATGAAACCGCACAGAATAATATTCTACAGGGATGGTGTAAGTGAAGGACAGTTCTCTCAAGTTCTATTTTATGAGGTGGATGCAATCAGGAAGGCATGTGCCTCGCTTGAAGATGGTTACCAGCCTCCAATAACCTTTGTAGTGGTGCAAAAGAGACATCATACCCGTCTTTTCCCCACTGGTCGGGAAACTGATCGAAGTGGAAACATCCTTCCAGGTACCGTTGTCGATACGAAAATTTGCCATCCAACTGAATTTGATTTCTACTTAAACAGCCATGCTGGCATTCAGGGGACAAGTAGACCAACGCATTATCACGTTTTATATGATGAAAACAAATTCACTGCTGATGCAATGCAAATGCTTACGAATAATCTATGCTACACGTATGCAAGGTGCACACGGTCTGTTTCCATTGTTCCACCAGCATACTATGCCCATCTTGCAGCCTTTCGTGCTCGTTATTACATGGAGGGTGATTCATCCGACAGCGGTTCGACGAGTTCAGGTGGTGGGAACGTAGAGATTCAACGGCTGCCAAGCATAAAAGAAAATGTGAAGGATGTCATGTTTTACTGTTGA 2913 44.52 MSRRGSGGGGGGGRGSGGRGGQPSPAISRGGGGRGGRGGGGRDGGRVGHPASQQFPSSTPQPTPVATPPPPQTSTGASSSSSSGTATHSQPEVSRIEAQVEKMTLTPQKVPPSSSKDLAVAKRPGYGTIGHKVVVRANHFLVHVADKDLYHYDVSITPEVTSKKVCREIIDQLAKMYRESHLGGRYIAYDGGKSVYVAGQLPFSSKEFMIKLVRKDDAGSSQPTRKEREFKVSIKFASKPDLHHLQQFLHGRQRDAPQETIQVLDVVLRTKPSFKYTVVGRSFFSLTLGEPGELGNGVEYWRGYYQSLRPVQMGLSLNIDVSARSFYEPICVTDYVAKHFNLRNFSKPISDQDCRKIRRVLKGVKVALTCREHARTYKITGISSEPVNRLMFTLDDQRTRISVAQYFREKYGVVLKFPSLPAIQAGNDAKPIYLPMEVCRIVGGQRYTKKLNERQVTEMLRATCQRPLDRANSIKKMVEKNDYSKDETVTDFGINVVQQLCDVDARVLPSPMLKYHETGKESRVDPRMGQWNMINKKMINGGRVDYWGCVNFSSRLDPGLPSEFCHQLVSMCNSKGMVFNPTPLFPVRTAHANQIDGVLRDIHSQSVKSLGAQGKSLQLLIIILPDVSGSYGKIKRICETELGIVSQCCQPRQAQKLNKQYFENVALKINVKVGGRNNVLNDAIQRRIPLVTDRPTIIIGADVTHPQPGEDSSASIAAVVASMDWPEVTKYRGIVSAQAHREEIIQDLYKESQDPQKGLVRAGMIRELFIAFRRSTNMKPHRIIFYRDGVSEGQFSQVLFYEVDAIRKACASLEDGYQPPITFVVVQKRHHTRLFPTGRETDRSGNILPGTVVDTKICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDENKFTADAMQMLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYMEGDSSDSGSTSSGGGNVEIQRLPSIKENVKDVMFYC 970
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 24055506 24062513 + CrPI670011_01g011860.1 Cre01g1186 488731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g1186 970 Gene3D - 687 970 IPR036397 GO:0003676(InterPro)
Cre01g1186 970 FunFam protein argonaute 10-like 687 970 - -
Cre01g1186 970 SMART Piwi_a_2 619 935 IPR003165 GO:0003676(InterPro)
Cre01g1186 970 SUPERFAMILY Ribonuclease H-like 614 936 IPR012337 -
Cre01g1186 970 SMART PAZ_2_a_3 332 465 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Cre01g1186 970 MobiDBLite consensus disorder prediction 1 93 - -
Cre01g1186 970 CDD Piwi_ago-like 487 934 IPR045246 -
Cre01g1186 970 ProSiteProfiles PAZ domain profile. 331 443 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Cre01g1186 970 Gene3D paz domain 324 447 - -
Cre01g1186 970 Pfam Piwi domain 620 934 IPR003165 GO:0003676(InterPro)
Cre01g1186 970 Pfam N-terminal domain of argonaute 132 268 IPR032474 -
Cre01g1186 970 CDD PAZ_argonaute_like 329 442 - -
Cre01g1186 970 FunFam Argonaute 10 507 681 - -
Cre01g1186 970 SUPERFAMILY PAZ domain 326 483 IPR036085 GO:0005515(InterPro)
Cre01g1186 970 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 123 956 - GO:0003723(PANTHER)|GO:0004521(PANTHER)|GO:0005737(PANTHER)|GO:0035194(PANTHER)
Cre01g1186 970 Pfam PAZ domain 353 460 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Cre01g1186 970 Pfam Argonaute linker 1 domain 279 328 IPR014811 -
Cre01g1186 970 MobiDBLite consensus disorder prediction 72 93 - -
Cre01g1186 970 Pfam Argonaute linker 2 domain 469 515 IPR032472 -
Cre01g1186 970 Gene3D - 507 682 - -
Cre01g1186 970 SMART DUF1785_2 277 329 IPR014811 -
Cre01g1186 970 Pfam Mid domain of argonaute 526 604 IPR032473 -
Cre01g1186 970 ProSiteProfiles Piwi domain profile. 619 935 IPR003165 GO:0003676(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1186 Cre-Chr1:24055506 Cre01g1584 Cre-Chr1:28930605 2.60E-305 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g1186 K11593 - csv:116403995 1656.34