Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g1187 ATGGCGCTCTCTCTACCCCTACAACTCATCCGTTTCCCTCCTCAACCATTATCCTCATCCTCTCAACATCTTCTCATCTCTGACCTCGCCTCCGTCTCGCGCTTCTTCCGATCTCCATGTCTTTCCTCTTTGGCTCCGTCGCGGAGCTGCACGATGAAGTTATCTTCCAGAACCAAGTGTTTCTCCATGTCCACCGAGGAGGAGCAGTGGAGCGAATCGGAAGCGTTGGTGTCCGATGTGGACGGAGGGGGAGATCTTGAGGATGATATTGATATTGGTGTTCAGGAAGACAGCTCTGTGGCCACTGCTGCTTCTGCGCAGAAAAATTCTTCCTCGTCGCCGAGTGATTATCTGTCGCTTGCGATCCGAGAGCAGGTTTATGAGGTGTTAGAGGTTAAAGATGATGGAACCGTATCTACCAGGAAGGTTAACAGACGGCAACTATTGAAGTCAAGTGGGCTTCGTCCACGTGATATCCGAAGTGTTGATCCATCTTTATTTTTGACAAACTCAATGCCTACATTACTGGTCCGTGAACATGCTATTTTGCTTAATCTGGGATCATTGAGAGCAATAGCTATGCAGGATTGTGTCCTCATATTCGATTATAACCGTCCAGGAGGACAAGCTTTTATTGAATCATTGTTGCCTCGATTGAACCCAAAAAACATGAATGGAGTGCCAGCAATGCCATTTGAACTTGAGGTTGTTGAAGCTGCATTGCTTTCACGAACTCAGCGTTTGGAGCAGCGACTAATGAAAGTAGAACCTCGTGTTCAAGCTCTGCTTGAGGTATTGCCCAACAAATTAACTGCAGATGTGTTGGAACAACTTCGTATTAGCAAGCAGACATTGGTTGAATTAGGGTCCAGGGCAGGGGCTCTTAGACAAATGCTTCTTGATCTTCTGGAGGATCCGCAAGAAATACGACGCATCTGTATTATGGGAAGAAATTGCACGCTTAATAAAAGAAATGATGATGTGGAGTGCTCTCTTCCTTTGGATAAGCAGATTGCGGATGAAGAGGAAGAAGAAATAGAAATGCTGTTGGAAAATTATCTCCAGAGATGCGAATCTTGTCATGGTCAGGCTGAAAGGCTTCTGGATTCAGCAAAAGAAATGGAAGATTCAATTGCCGTAAATTTGAGCTCGCGGCGACTAGAGGTTAGCAGAGTGGAGTTGCTTCTCCAAGTTGGGACATTTTGTGTGGCAGTTGGTGCTTTAGTTGCAGGAATATTCGGCATGAACTTACGATCATACCTTGAAGAACACGTGTTTGCCTTCTGGTTAACAACAGCCGGGATAATTAGACAGGAGAATCCTGTAGCTAAGTACTTGTTCAGGTCATTCAACACTCAATCTTGGAGGGGCTGCTATATCCCAGTGATGAGGATGCAAATTGTGAAGGCTGCATATATTATTAGGCCATGCGCCAATATTGGCACCATCACTCAGTTTGGTTTATGA 1467 45.47 MALSLPLQLIRFPPQPLSSSSQHLLISDLASVSRFFRSPCLSSLAPSRSCTMKLSSRTKCFSMSTEEEQWSESEALVSDVDGGGDLEDDIDIGVQEDSSVATAASAQKNSSSSPSDYLSLAIREQVYEVLEVKDDGTVSTRKVNRRQLLKSSGLRPRDIRSVDPSLFLTNSMPTLLVREHAILLNLGSLRAIAMQDCVLIFDYNRPGGQAFIESLLPRLNPKNMNGVPAMPFELEVVEAALLSRTQRLEQRLMKVEPRVQALLEVLPNKLTADVLEQLRISKQTLVELGSRAGALRQMLLDLLEDPQEIRRICIMGRNCTLNKRNDDVECSLPLDKQIADEEEEEIEMLLENYLQRCESCHGQAERLLDSAKEMEDSIAVNLSSRRLEVSRVELLLQVGTFCVAVGALVAGIFGMNLRSYLEEHVFAFWLTTAGIIRQENPVAKYLFRSFNTQSWRGCYIPVMRMQIVKAAYIIRPCANIGTITQFGL 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 24094802 24104240 + CrPI670011_01g011870.1 Cre01g1187 488732

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g1187 488 CDD Mrs2_Mfm1p-like 129 436 IPR039204 -
Cre01g1187 488 Gene3D - 119 203 - -
Cre01g1187 488 Coils Coil 336 356 - -
Cre01g1187 488 FunFam Magnesium transporter MRS2-11, chloroplastic 205 387 - -
Cre01g1187 488 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 104 436 IPR039204 GO:0009941(PANTHER)|GO:0015095(PANTHER)|GO:0015693(PANTHER)
Cre01g1187 488 FunFam Magnesium transporter MRS2-11, chloroplastic 122 203 - -
Cre01g1187 488 Pfam Magnesium transporter MRS2-like 132 386 - -
Cre01g1187 488 Gene3D Magnesium transport protein CorA, transmembrane region 206 387 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g1187 K16075 - - csv:101219314 709.909
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre10g1438 . 82 486 MRS2 Gene Family AT1G16010 86.4 8.3e-190 660.2
Cre08g0982 . 150 506 MRS2 Gene Family AT1G16010 52.0 1.0e-99 360.9
Cre06g1415 . 1 359 MRS2 Gene Family AT5G64560 79.9 1.8e-156 549.3
Cre07g0431 . 708 1080 MRS2 Gene Family AT5G64560 68.5 4.4e-131 464.9
Cre02g1047 . 14 495 MRS2 Gene Family AT3G19640 64.4 1.1e-155 547.0
Cre05g1128 . 59 433 MRS2 Gene Family AT3G58970 69.6 6.8e-136 481.1
Cre02g0369 . 59 416 MRS2 Gene Family AT3G58970 71.5 9.2e-133 470.7
Cre08g0982 . 144 506 MRS2 Gene Family AT2G03620 67.5 1.7e-128 456.4
Cre10g1438 . 79 486 MRS2 Gene Family AT2G03620 54.9 2.5e-111 399.4
Cre06g1415 . 1 321 MRS2 Gene Family AT5G09690 77.2 1.1e-127 453.4
Cre07g0431 . 708 1042 MRS2 Gene Family AT5G09690 63.4 5.8e-108 387.9
Cre10g1438 . 83 422 MRS2 Gene Family AT5G09690 50.6 8.1e-78 287.7
Cre06g1415 . 23 281 MRS2 Gene Family AT5G09720 69.1 8.0e-88 320.9
Cre07g0431 . 744 1002 MRS2 Gene Family AT5G09720 61.3 1.2e-75 280.4
Cre10g1438 . 82 486 MRS2 Gene Family AT1G80900 84.7 3.1e-184 641.7
Cre08g0982 . 151 506 MRS2 Gene Family AT1G80900 54.3 8.8e-99 357.8
Cre01g1187 . 16 436 MRS2 Gene Family AT5G22830 68.6 5.7e-149 524.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004489 1 3 0 1 1 1 3 1 1 1 1 1 2 1 2 3 1 2 2 1 2 1 1 1 1 2 1 1 1 1 41