Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g1204 ATGGGTCAGATCCAATACTCTGAGAAATACTTTGATGATATCTATGAGTACAGGCATGTAGTGCTTCCTCCTGAAGTCGCGAAACTTCTCCCCAAGAATCGCCTTCTTTCTGAAAATGAATGGCGAGCCATTGGTGTTCAGCAAAGCCGTGGATGGGTTCATTATGCAATTCATCGCCCAGAGCCGCACATAATGCTGTTCAGAAGACCACTCAATTATCAACAGCAGCAAGAGAATCAAGCACAGCAGCAGATTATGGCCAAGTGA 267 45.32 MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENQAQQQIMAK 88
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 24401613 24402157 + CrPI670011_01g012040.1 Cre01g1204 488749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g1204 88 Pfam Cyclin-dependent kinase regulatory subunit 4 70 IPR000789 GO:0016538(InterPro)
Cre01g1204 88 FunFam Cyclin-dependent kinases regulatory subunit 1 84 - -
Cre01g1204 88 PRINTS Cyclin-dependent kinase regulatory subunit signature 40 54 IPR000789 GO:0016538(InterPro)
Cre01g1204 88 PRINTS Cyclin-dependent kinase regulatory subunit signature 18 32 IPR000789 GO:0016538(InterPro)
Cre01g1204 88 PRINTS Cyclin-dependent kinase regulatory subunit signature 3 17 IPR000789 GO:0016538(InterPro)
Cre01g1204 88 PRINTS Cyclin-dependent kinase regulatory subunit signature 55 69 IPR000789 GO:0016538(InterPro)
Cre01g1204 88 SMART CKS_2 3 72 IPR000789 GO:0016538(InterPro)
Cre01g1204 88 SUPERFAMILY Cell cycle regulatory proteins 1 83 IPR036858 GO:0016538(InterPro)
Cre01g1204 88 ProSitePatterns Cyclin-dependent kinases regulatory subunits signature 1. 6 24 IPR000789 GO:0016538(InterPro)
Cre01g1204 88 Gene3D - 1 84 IPR036858 GO:0016538(InterPro)
Cre01g1204 88 PANTHER CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7 3 86 - GO:0000307(PANTHER)|GO:0007346(PANTHER)|GO:0019005(PANTHER)|GO:0019901(PANTHER)|GO:0042393(PANTHER)|GO:0043130(PANTHER)|GO:0061575(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1204 Cre-Chr1:24401613 Cre02g2473 Cre-Chr2:38030447 1.20E-44 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g1204 K02219 - rcu:8275256 157.532