Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g1212 ATGTTTTCTCTTCCTTCACAAGATCCCTTGGTTTCATCTTCTAATGATCATCATGAAACCCTAGACAACCTTCTTTCTTCATATTCCCAATCAAGCAACTCTCTCCTTTATAACCTCTCAATTTTGAAGGAGAAACTCCACCAAATCCAATCTGTTGTCAACATAGCCATCTACAACCTTCAAAACTCAACTGAATCTCTGCCCCCGGCCTCATCGCCAGTGGCGACTGCGGCCGTCAACTCTTTGATTCAAGAACTCATCATGGCTGCTTCCTCCATGTTGTTCACATGTCAACAGATGGATAACCTCGTCGTGAATGCCTCCTTACACAACAACAACGTCGATAACAACCTCCACGATCAGCACCACCACCGTCAAGGTCCCGTTGACGATGACAATCGACGATCCAACACCCTTCTAGACATGGCCAACGACCATCATCACCAACATCAGGATTGGTACAACATGACGACATCTACTAATTATAACAACAACGACAACAACAACAGTAGAATAACGACAACAAAAACAACACAAGATCATCGAAATTCGATCAATATCGTCGAGCTAGACGCTTCGGATCTTCTAGCAAAATACACCCATTATTGTCAAATTTGTGGGAAAGGGTTCAAGCGGGATGCCAACTTGAGAATGCACATGCGAGCGCACGGGGACGAGTACAAAGCAAGCGGGGCGTTGAGCAACCCAGAGAAGAGCCATAGAAGGGACTTGAATAATATAAGCAAGATGGGGACCAAATATTCATGTCCACAAGAAGGCTGCAGATGGAACCAAAAACATGTCAAGTTTCAACCATTGAAATCACTGATTTGTGTGAAAAATCACTTCAAAAGAACTCATTGCCCCAAAATGTATGTTTGCAAATTGTGTAGTAGGAAGAAATTTTCAGTGCTATCTGATTTGAGAACTCATGAGAAGCACTGTGGAGATGTGAAATGGCTATGTTCTTGTGGAACAACATTTTCCAGAAAAGATAAGCTGATGGGACATGTTGCTTTGTTTGTCGGCCATGCTCCGGCGATCGGTTCGTTGACAAAATTTTCGGGAAAACAGGAAGAACATCAGTATGTTCATTCGTTCTAA 1104 43.03 MFSLPSQDPLVSSSNDHHETLDNLLSSYSQSSNSLLYNLSILKEKLHQIQSVVNIAIYNLQNSTESLPPASSPVATAAVNSLIQELIMAASSMLFTCQQMDNLVVNASLHNNNVDNNLHDQHHHRQGPVDDDNRRSNTLLDMANDHHHQHQDWYNMTTSTNYNNNDNNNSRITTTKTTQDHRNSINIVELDASDLLAKYTHYCQICGKGFKRDANLRMHMRAHGDEYKASGALSNPEKSHRRDLNNISKMGTKYSCPQEGCRWNQKHVKFQPLKSLICVKNHFKRTHCPKMYVCKLCSRKKFSVLSDLRTHEKHCGDVKWLCSCGTTFSRKDKLMGHVALFVGHAPAIGSLTKFSGKQEEHQYVHSF 367
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 24571319 24572422 - CrPI670011_01g012120.1 Cre01g1212 488757
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cre01g1212 367 ProSiteProfiles Zinc finger C2H2 type domain profile. 201 228 IPR013087 -
Cre01g1212 367 Gene3D Classic Zinc Finger 290 340 - -
Cre01g1212 367 SMART c2h2final6 254 287 IPR013087 -
Cre01g1212 367 SMART c2h2final6 292 314 IPR013087 -
Cre01g1212 367 SMART c2h2final6 201 223 IPR013087 -
Cre01g1212 367 Gene3D Classic Zinc Finger 178 259 - -
Cre01g1212 367 FunFam Zinc finger protein 574 200 225 - -
Cre01g1212 367 Pfam Zinc finger, C2H2 type 201 223 IPR013087 -
Cre01g1212 367 ProSitePatterns Zinc finger C2H2 type domain signature. 203 223 IPR013087 -
Cre01g1212 367 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 26 353 IPR044300 GO:0010044(InterPro)|GO:0010447(InterPro)
Cre01g1212 367 SUPERFAMILY beta-beta-alpha zinc fingers 199 226 IPR036236 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1212 Cre-Chr1:24571319 Cre09g0990 Cre-Chr9:10177712 1.30E-60 dispersed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53017 PF00096 zf-C2H2 9.40E-05 CL0361 Cre TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g1212 - - - 0.0