Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g1223 ATGGCCATGGCTATGGCCCATCACAGGGAGAACGGCGATGGGGGTATCAATGGCCACCTTGATAGCACTGGGAAGTATGTCCGTTACACGACGGAGCAAGTGGAGGCTCTTGAGCGAGTCTATGCGGAATGTCCTAAACCAAGCTCTTTGCGCCGTCAGCAGCTGGTTCGTGATTGCCCCATTTTAGCCAACATCGAGCCCAAGCAGATCAAAGTCTGGTTCCAGAACCGCAGATGTAGAGAGAAACAAAGAAAAGAGGCTTCTCGTTTACAGTCACTAAATAGTAAATTGACGGCCATGAACAAGCTGTTGATGGAGGAGAATGATAGGTTGCAGAAGCAAGTGTCTCAGCTTGTCTGTGAGAATGGGTATATGCGCCAACATTTGCAAACTGCTAATGCAACAACAGCAACAACTACTGATGCAGCTTGTGACTCAGTGGCTACTACCCCTCAGCATTCACTTAGAGATGCTAGTAGCCCTGCTGGACTCTTGTCTATTGCCGAGGAGATTTTGGCAGCCTTCCTGTCAAAGGCTATGGGAACTGCTGTCGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCGGTGGGAATCTTTGCCATTTCACAAAGTTGCAGTGGAGTGGCCGCTCGAGCTTGTGGTCTTGTCGGTTTAGAGCCCATGAAGATTGCAGAGATCCTAAAAGATCGCCCATCTTGGTTTCGTGATTGCCGGAGCCTTGAAGTCTTTACTACATTTCCCACTGGTGATGGTGGAACAATCGAACTTGTTTATACGCAGGTTTATGCCCCTACTACATTAGCACCTGCACGAGATTTTTGGACTCTAAGATACACCAGAACTTTAGAAAATGGTAATCTTGTGGTTTGTGAGAGATCGCTGTCTGGGTCTGGCACTGGGCCAAATGCAGCTTCTGCTTCTCAATTTGTAAGAGCTGAAATGCTTCCCAGTGGCTATTTGATTCGTCCATGCGAGGGTGGAGGTTCGATCATCCACATTGTAGACCATCTAAATCTTGAGCCTTGGGGTGTGCCAGAGGTAGTACGACCACTTTATGAATCATCAAAGGCCGTTGCGCAGAAAATGACCATAGCAGCTCTTCGCTACATTAGGCAAATCGCTCAAGAGACAAGTGGTGAAGTAGTATACAGTTTAGGCAGGCAACCGGCCGTTCTGCGAACTTTTAGCCAAAGATTAAGCAGAGGATTTAATGATGCTGTCAATGGATTCAATGATGATGGGTGGTCTTTGATCAATTGTGATGGAGCTGAAGATGTGACCCTTGCCATAAATTCAAGCAAGAATCTTAATACATCATATGATCCAGTCATTTCTCTTGCATTCCACGGTGGGATCCTTTGTGCAAAGGCTTCCATGCTTCTCCAAAATGTTCCTCCCATTGCTCTAATTCGCTTCTTGAGGGAGCATCGGTCCGAGTGGGCTGATTTCAATGTTGATGCCTACTCTGCTGCATCGCTAAAAACTGGCTCGTATGTATACCCGGGCATGAGACCGACGAGGTTTACAGGGAGTCAAATCATCATGCCACTCGGTCATACAATTGAACAAGAAGAGTTGCTTGAAGTTGTAAGACTTGAAAGCCACCCTCTTGCTCAAGAAGATGCTTTTATGTCCCGGGACGTTCATCTCTTGCAGGTTTGTACTGGAATCGATGAGAATGCTGTTGGGGCATGTTCCGAACTTGTGTTTGCTCCCATCGATGAGATGTTTCCTGATGATGCTGTGCTGCTGGCATCTGGTTTCAGGATCATTCCATTACATTCTAAAACAAGTGACCCAAAAGATACTTGGAACTCAAATAGGACTCTGGATCTCACGTCCATTCTTGAAGTTGGCTCATCTGCTTCTGAAGATGCTGCTGCTGCTGCATCAACTTCTAACTTCAGATCGGTTTTGACCATTGCTTTCCAGTTCCCGTTCGGCGTCAACTTGCAGGATGACATTGCAGTGATGGCTCGACAGTATGTCCGGAGTGTCATTTCTGCTGTGCAGAGGGTTGCAGTCGCCATATCACCCCCTAGTTTAAGCTCGTTGTCAGAGCCAAAGCAAACATCTGCCTGTCCAGAAGCGCTTACACTGGTTCGATGGGTCTGCCACAGCTACAGATGCCATACTGGAACAGAGCTCGTGCCATCAGAAAGTGTGGATGGTGACTCGGTGTTGAAACATCTATGGAATCATCAGGATGCAATTCTGTGTTGTTCCCTCAAGTCACTGCCCCCAGTATTCATGTTTGCAAACCAAGCAGGCCTTGACATGTTGGAGACAACCTTAGTTGCCTTACAAGACATCACTTTGGATAAAATTTTTGGCGATTCGGTCCGCAAGGCTTTCTCTGCTGTTTTTTCCAGCTTAATGAACCAGGGCTTTGCTTACATTCCTGCTGGAATTTGCATGTCAACAATGGGACGACATGCTTCCTTTGAACAGGCTGTTGCATGGAAAGTCCTTGCAGAAGATGAGTCTACCGTGCACTGTCTCGCCTTCTCCTTCGTCAACTGGTTGTTCCTGTGA 2544 47.33 MAMAMAHHRENGDGGINGHLDSTGKYVRYTTEQVEALERVYAECPKPSSLRRQQLVRDCPILANIEPKQIKVWFQNRRCREKQRKEASRLQSLNSKLTAMNKLLMEENDRLQKQVSQLVCENGYMRQHLQTANATTATTTDAACDSVATTPQHSLRDASSPAGLLSIAEEILAAFLSKAMGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVGLEPMKIAEILKDRPSWFRDCRSLEVFTTFPTGDGGTIELVYTQVYAPTTLAPARDFWTLRYTRTLENGNLVVCERSLSGSGTGPNAASASQFVRAEMLPSGYLIRPCEGGGSIIHIVDHLNLEPWGVPEVVRPLYESSKAVAQKMTIAALRYIRQIAQETSGEVVYSLGRQPAVLRTFSQRLSRGFNDAVNGFNDDGWSLINCDGAEDVTLAINSSKNLNTSYDPVISLAFHGGILCAKASMLLQNVPPIALIRFLREHRSEWADFNVDAYSAASLKTGSYVYPGMRPTRFTGSQIIMPLGHTIEQEELLEVVRLESHPLAQEDAFMSRDVHLLQVCTGIDENAVGACSELVFAPIDEMFPDDAVLLASGFRIIPLHSKTSDPKDTWNSNRTLDLTSILEVGSSASEDAAAAASTSNFRSVLTIAFQFPFGVNLQDDIAVMARQYVRSVISAVQRVAVAISPPSLSSLSEPKQTSACPEALTLVRWVCHSYRCHTGTELVPSESVDGDSVLKHLWNHQDAILCCSLKSLPPVFMFANQAGLDMLETTLVALQDITLDKIFGDSVRKAFSAVFSSLMNQGFAYIPAGICMSTMGRHASFEQAVAWKVLAEDESTVHCLAFSFVNWLFL 847
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 25114660 25122091 + CrPI670011_01g012230.1 Cre01g1223 488768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g1223 847 Pfam START domain 167 375 IPR002913 GO:0008289(InterPro)
Cre01g1223 847 CDD START_ArGLABRA2_like 161 377 - -
Cre01g1223 847 SMART START_1 166 376 IPR002913 GO:0008289(InterPro)
Cre01g1223 847 ProSiteProfiles 'Homeobox' domain profile. 20 84 IPR001356 GO:0003677(InterPro)
Cre01g1223 847 CDD homeodomain 25 85 IPR001356 GO:0003677(InterPro)
Cre01g1223 847 ProSiteProfiles START domain profile. 157 385 IPR002913 GO:0008289(InterPro)
Cre01g1223 847 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 20 847 IPR044830 GO:0003700(InterPro)
Cre01g1223 847 Coils Coil 90 121 - -
Cre01g1223 847 CDD bZIP 77 116 - -
Cre01g1223 847 SMART HOX_1 22 88 IPR001356 GO:0003677(InterPro)
Cre01g1223 847 Pfam Homeodomain 25 83 IPR001356 GO:0003677(InterPro)
Cre01g1223 847 SUPERFAMILY Homeodomain-like 23 87 IPR009057 -
Cre01g1223 847 FunFam Homeobox-leucine zipper protein REVOLUTA 25 80 - -
Cre01g1223 847 Pfam MEKHLA domain 702 845 IPR013978 -
Cre01g1223 847 Gene3D - 202 383 IPR023393 -
Cre01g1223 847 SUPERFAMILY Bet v1-like 166 378 - -
Cre01g1223 847 Gene3D - 19 91 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1223 Cre-Chr1:25114660 Cre02g2424 Cre-Chr2:37600869 0.00E+00 dispersed
Cre01g1223 Cre-Chr1:25114660 Cre04g2117 Cre-Chr4:38417369 0.00E+00 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53018 PF01852 START 4.90E-47 CL0209 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g1223 K09338 - rcu:8266275 1340.1