Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g1243 ATGGGATCAACAACAACAAACAGCCATTATTGTAGCCCTTGTGCAGCTTGCAAATTCCTAAGAAGAAAATGCTTAGAAGGATGTGTTTTTGCACCCTATTTTCCACCTGAAGAACCCCAAAAATTTGCCAATGTCCACAAGGTATTCGGAGCGAGTAACGTTGCAAAGCTCCTGAACGACGTTCTTCCTCATCAACGACAAGATGCCGTCGTTTCGCTCGCCTATGAAGCCGAGGCGAGAATCAGAGATCCTGTTTATGGCTGTGTTGGAGCAATTTCTTTCCTCCAAAAACAGGTCCAAAGGCTCCAAAAAGAACTTGATGCTGCTAAAGCTTGCCTTTTTCTCTACTCTTGCACTGATTTCTCAACTCCCCTTTTGCCTCCTCACCCTCATCCACTGATTTGGAATAATAATCTTAATCTTAATAATAATAATCATGATATTACTAATTCTTCTATGTATTCTAATGGAGGAATTTGA 480 41.04 MGSTTTNSHYCSPCAACKFLRRKCLEGCVFAPYFPPEEPQKFANVHKVFGASNVAKLLNDVLPHQRQDAVVSLAYEAEARIRDPVYGCVGAISFLQKQVQRLQKELDAAKACLFLYSCTDFSTPLLPPHPHPLIWNNNLNLNNNNHDITNSSMYSNGGI 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 25632238 25632717 + CrPI670011_01g012430.1 Cre01g1243 488788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g1243 159 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
Cre01g1243 159 Coils Coil 92 112 - -
Cre01g1243 159 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
Cre01g1243 159 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 12 118 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1243 Cre-Chr1:25632238 Cre11g1551 Cre-Chr11:24820525 1.10E-40 dispersed
Cre01g0532 Cre-Chr1:4618826 Cre01g1243 Cre-Chr1:25632238 6.00E-45 wgd
Cre01g1243 Cre-Chr1:25632238 Cre10g1536 Cre-Chr10:29334984 8.70E-49 wgd
Cre01g1243 Cre-Chr1:25632238 Cre06g2588 Cre-Chr6:33590516 1.90E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53020 PF03195 LOB 4.00E-42 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g1243 - - - 0.0