Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g1264 ATGCATGGGGATTTGCCGTCGCCGGCGGTTCAAATCGTCCCGCGTTTCTACCACGAGAGGGTTATTGATCACTACAACAACCCTCGGAATGTTGGATCGTTTGATAAGAACGATCCGACGGTCGGCACCGGCCTCGTCGGCGCGCCCGCCTGTGGCGATGTTATGAAGCTTCAGATCAAGGTTGATGAGAAGACTGGTAAGGTTGTAGATGCTTGCTTCAAGACGGAAATTGCAAAACATCTCTCCCTACCGCCTGTTAAGTTGCACTGCAGCATGCTTGCTGAGGACGCTATCAAGGCTGCTATTAAAGATTATGAAGCGAAGCGTGCAAAATTGGCAGATGGCGATTGGTTGAATTTCTCCAACCATTCACTGCAAATCACCGGTCGGCCGTCGCTTGATCAGAATCCGAAGTCATTCTACTTCTTCCGAATTCATTCCGGGTGTACGACGAGTGGTTGGTCAAGTAAAGTTGAGGAGTTGTGGGTTAGGCAGCTGGGTGGTGAAGGTTTGGTATTAATGGCTGGTCCTGGGGAAAACCTACATCCTGAACTTCGTGGTTTAAAGGGATTGAATCAGCAAGCTGAGGATAAAAACCAGCATGTTGACAAAGAGGGTGGCCTGAGTGGTGGTGAAAGGGACATGGCTCCGGTTACCGGCAATTCCATTCACAGGTCAGGTTCTCGTCCACAGCTAGACCTCAGCAAAGCAGAAATTCAGGGAAATTTTGAGGAGAGAGACCCCACAATTCTGTTGCCTAACCAATCTGATGATATATCTCACCTTGCTCTTGACATCGGCGGATCTCTCATCAAATTGGTGTACTTTTCAAGACATGAAGATCAATCGGTTGATGATAAGAGAAAGAGAAGCATGAAGCAGAGGCTGGGGTTATCAAATGGTAATAGAAGAAGCTATCCAGTTCTTGGTGGGAGGCTTCATTTTGTAAAGTTTGAGACAAGCAAGATTAACGAGTGTTTAGACTTCATCCATTCGAAGCAGCTACATCGTGGTGCTTGCAAAGATTTACCTCATTGGCATTCAGACTCAGCAAATGAAAATGCCGTCATTAAGGCTACAGGTGGAGGGGCATACAAGTTTGCAGATCTTTTCAAAGAAAGACTTGGAGTAAGCCTTGATAAAGAAGATGAAATGGATTGTCTTGTGGCTGGAGCAAATTTTCTGCTAAAGGCAATACGTCACGAAGCTTTCACTCATATGGAGGGCAAAAAAGAGTTTGTGCAACTTGACCATAACGAATTGTTTCCTTATCTGCTTGTTAACATTGGATCTGGTGTCAGCATGATCAAGGTTGATGGCGATGGGAAATTTCAGAGAGTTAGTGGGACAAATGTTGGAGGGGGCACTTACTGGGGCTTAGGAAGACTGTTAACAAAATGTAATAGCTTTGATGAGTTGTTAGAGCTTAGTCAAAAGGGAGATAATGGCACAATTGACATGCTTGTTGGGGACATATATGGTGGCATGGATTACTCCAAGATTGGTCTCTCTGCGTCAACAATTGCATCTAGTTTTGGCAAGACCATCTCAGTGAACAAGGAGCTTAAAGACTACAGACCAGAAGATATCTCATTGTCTCTCTTGCGAATGATCTCGTATAACATTGGACAGATTTCGTACTTGAATGCTCTACGGTTTGGACTTAAGAGAATATTTTTTGGAGGATTCTTTATCAGGGGACATGCATATACCATGGATACAATTTCTTTCGCAGTTCAATTCTGGTCGAAAGGAGAAGCACAGGCAATGTTCTTGCGTCATGAGGGGTTCTTAGGAGCCTTAGGTGCATTCATGAGCTATGAAAAGCATGGTCTTGATGATCTATTGGCCCATCAGTTAGTCGAAAGGTTTCCTATGGGTGCACCATACACGGGAGGGAAAGTTCATGGGCCTCCACTTGGTGATTTGAATGAAAAGATTTCTTGGATGGAGAAATTTTTGCAGAAGAGAACAGAAATTACTGCACCTGTCCCTATGGCTCCCCCTGGAACAACTGGACTTGGAGGCTTTGAAGTCCCTTTATCCAAAGGAGAAACCCTGCGATCTGATGCAAGTGCCCTAAATGTCGGTGTACTTCACCTGGTACCCACTTTGGAGGTGTTTCCACTGTTAGCTGATCCAAAGACATATGAACCTAATACAATTGATCTCTCTGATCACAGTGAGTTGGAGTACTGGTTCACCGTGCTTTCAGAGCATCTAGCAGACCTTGTTGATAAGGCTGTTGCAAGTGAAGGTGGGACTGATGATGCCAAGAGAAGGGGTGATGCATTTGCTCGGGCATTTTCTGCCCACTTGAGGAGGTTGATGGAGGAACCTACGGCATATGGAAAGTTGGGTTTGGCTAATCTTCTGGAACTGAGGGAAGAGTGCCTGAGGGAATTCCAATTTTTTGATGCCTATAGAAGCATAAAGCAGAGGGAGAATGAGGCATCACTTGCTGTGTTGCCTGACCTGCTGTTGGAACTTGATAGCATGAATGAGGAAGCAAGACTGCTTACCCTAATTGAAGGTGTTCTTGCTGCAAACATTTTTGATTGGGGCTCTCGTGCTTGTGTTGATCTCTATCACAAGGGGACAATTATTGAGATTTACCGAATGAGTCGCAACAAGATGCAGAGGCCATGGCGGGTTGATGATTTTGATGTCTTCAGAGAGAGAATGTTAGGATCTGGGGACGAGAGACCCCTTCCACATAAAAGAGCTCTTCTCTTTGTGGACAATTCAGGTGCTGATGTTGTTTTAGGGATGCTTCCCTTGGCAAGGGAACTCCTCCGACGTGGAACGGAAGTTGTTTTAGTTGCAAACTCTCTTCCTGCCCTAAATGATGTTACCGCAATGGAGCTTCCTGATATTGTAGCTGAGGCTGCCAAGCATTGTGACATACTACGTAGAGCTGCCGAAGCAGGGGGACTGATTGTGGATGCCATGATCGACTCTGCGGATGGTTCTAAAGAGAGATCATCTTTTGTTCCCTTGATGGTTGTTGAAAATGGGTGTGGTAGTCCATGTATAGATCTAAGGCAGGTCAGCTCTGAGTTGGCTGCCGCAGCTAAAGATGCTGATTTGGTTATCTTGGAAGGGATGGGAAGAGCCCTTCACACCAACTTCAATGCTAAGTTTAAATGTGATGCTTTGAAGCTTGCCATGGTGAAAAATCAGAGGCTGGCAGAAAAATTGATCAAAGGAAACATATACGATTGTGTCTGCAGATACGAACCATCCCACTGA 3252 45.39 MHGDLPSPAVQIVPRFYHERVIDHYNNPRNVGSFDKNDPTVGTGLVGAPACGDVMKLQIKVDEKTGKVVDACFKTEIAKHLSLPPVKLHCSMLAEDAIKAAIKDYEAKRAKLADGDWLNFSNHSLQITGRPSLDQNPKSFYFFRIHSGCTTSGWSSKVEELWVRQLGGEGLVLMAGPGENLHPELRGLKGLNQQAEDKNQHVDKEGGLSGGERDMAPVTGNSIHRSGSRPQLDLSKAEIQGNFEERDPTILLPNQSDDISHLALDIGGSLIKLVYFSRHEDQSVDDKRKRSMKQRLGLSNGNRRSYPVLGGRLHFVKFETSKINECLDFIHSKQLHRGACKDLPHWHSDSANENAVIKATGGGAYKFADLFKERLGVSLDKEDEMDCLVAGANFLLKAIRHEAFTHMEGKKEFVQLDHNELFPYLLVNIGSGVSMIKVDGDGKFQRVSGTNVGGGTYWGLGRLLTKCNSFDELLELSQKGDNGTIDMLVGDIYGGMDYSKIGLSASTIASSFGKTISVNKELKDYRPEDISLSLLRMISYNIGQISYLNALRFGLKRIFFGGFFIRGHAYTMDTISFAVQFWSKGEAQAMFLRHEGFLGALGAFMSYEKHGLDDLLAHQLVERFPMGAPYTGGKVHGPPLGDLNEKISWMEKFLQKRTEITAPVPMAPPGTTGLGGFEVPLSKGETLRSDASALNVGVLHLVPTLEVFPLLADPKTYEPNTIDLSDHSELEYWFTVLSEHLADLVDKAVASEGGTDDAKRRGDAFARAFSAHLRRLMEEPTAYGKLGLANLLELREECLREFQFFDAYRSIKQRENEASLAVLPDLLLELDSMNEEARLLTLIEGVLAANIFDWGSRACVDLYHKGTIIEIYRMSRNKMQRPWRVDDFDVFRERMLGSGDERPLPHKRALLFVDNSGADVVLGMLPLARELLRRGTEVVLVANSLPALNDVTAMELPDIVAEAAKHCDILRRAAEAGGLIVDAMIDSADGSKERSSFVPLMVVENGCGSPCIDLRQVSSELAAAAKDADLVILEGMGRALHTNFNAKFKCDALKLAMVKNQRLAEKLIKGNIYDCVCRYEPSH 1083
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 25859804 25883182 + CrPI670011_01g012640.1 Cre01g1264 488809

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g1264 1083 FunFam Pantothenate kinase 2 719 805 - -
Cre01g1264 1083 Gene3D - 76 111 - -
Cre01g1264 1083 FunFam Pantothenate kinase 2 253 415 - -
Cre01g1264 1083 Gene3D - 16 75 - -
Cre01g1264 1083 MobiDBLite consensus disorder prediction 196 210 - -
Cre01g1264 1083 Gene3D - 253 415 - -
Cre01g1264 1083 Gene3D Uncharacterised protein PF01937, DUF89, domain 3 884 1081 - -
Cre01g1264 1083 SUPERFAMILY AF1104-like 698 1081 IPR036075 -
Cre01g1264 1083 Pfam NifU-like N terminal domain 17 75 IPR002871 GO:0005506(InterPro)|GO:0016226(InterPro)|GO:0051536(InterPro)
Cre01g1264 1083 PANTHER PANTOTHENATE KINASE 232 1079 IPR004567 GO:0004594(InterPro)|GO:0004594(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0015937(InterPro)|GO:0015937(PANTHER)
Cre01g1264 1083 Pfam Damage-control phosphatase ARMT1-like domain 757 1067 IPR002791 -
Cre01g1264 1083 NCBIfam type II pantothenate kinase 261 606 IPR004567 GO:0004594(InterPro)|GO:0005524(InterPro)|GO:0015937(InterPro)
Cre01g1264 1083 FunFam Pantothenate kinase 1 261 401 - -
Cre01g1264 1083 SUPERFAMILY Actin-like ATPase domain 259 402 IPR043129 -
Cre01g1264 1083 Coils Coil 185 205 - -
Cre01g1264 1083 SUPERFAMILY Actin-like ATPase domain 374 607 IPR043129 -
Cre01g1264 1083 Gene3D - 483 596 - -
Cre01g1264 1083 Gene3D - 720 804 IPR035073 -
Cre01g1264 1083 FunFam Pantothenate kinase 2 402 587 - -
Cre01g1264 1083 CDD IscU_like 17 101 IPR002871 GO:0005506(InterPro)|GO:0016226(InterPro)|GO:0051536(InterPro)
Cre01g1264 1083 Pfam Fumble 261 605 IPR004567 GO:0004594(InterPro)|GO:0005524(InterPro)|GO:0015937(InterPro)
Cre01g1264 1083 SUPERFAMILY SufE/NifU 16 109 - -
Cre01g1264 1083 MobiDBLite consensus disorder prediction 192 231 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g1264 K24265 - - csv:101203117 1724.14
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1264 Cre-Chr1:25859804 Cre02g0661 Cre-Chr2:3564134 2.10E-53 dispersed
Cre01g1264 Cre-Chr1:25859804 Cre05g2703 Cre-Chr5:37945043 7.10E-134 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g757 Blo04g00734 . . . . . . . . Cmo18g00128 . . . . . . . . . . . . . . . . . . . . . . Cone16ag0101 Cone13ag0142 . Lsi02g00371 Csa01g00852 Chy12g01267 Cme12g01694 . . . Bda14g00811 . Bpe15g00638 Bma03g00781 . . . . . Cma18g00170 . Car18g00161 Cpe09g01025 . Bhi08g01609 Tan05g2008 . Lac10g0449 Hepe07g2227 . . Cla01g01300 Cam01g1429 Cec01g1464 Cco01g1460 Clacu01g1366 Cmu01g1272 Cre01g1264 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005817 1 5 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 3 1 39