Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g1270 ATGAGGAATTTAAACTGGTTTAAGCCAATTTCGATTAATGGGAAGCCTGGGAGGAGGCTTTCACTAGGAGAATACCAGCGTGCTGTGTCGTGGTCTAAGTATTTGGTGTCTTCAGGAGCAGAGATAAAGGGAGAGGGAGAAGAGGAATGGAGTGCTGACATGTCCCAGTTGTTCATTGGCTTCAAATTTGCTACTGGAAGGCACAGTAGGATTTACAGAGGTGTGTATAAACAGAGGGATGTTGCAATTAAGCTGATAAGCCAGCCTGAGGAGGATGAAAATTTGGCTAACTTTCTTGAGAATCAGTTCATTTCAGAGGTGGCATTGCTGTTTCGATTGAGACATCCCAATATCATCACTTGCCTTTTTATGGCAGCATGCAATGCTTTTAGCATCTTATCACGGGAAGAGCAGGGGAAAATGACTTCTGTATTCCCTGAAAATGATAAAGATAATTTCATTGCAGCTTGCAAGAAACCTCCAGTATTTTGTATTATCACGGAGTATATGACAGGAGGTTCGTTAAGAAAATATCTCCATCAACAAGAGCCACATTCCGTTCCGCTGAACTTGGTTCTGAAACTAGCCCTCGAAATCTCACGTGGGATGCAGTACCTTCATTCTCAGGGAATACTACACAGAGATCTCAAATCAGAAAATCTCTTACTCGGTGAAGATATGTGTGTTAAGGTAGCAGATTTCGGTATCTCATGCTTAGAATCTCAATGTGGAAGTGCGAAGGGATTCACCGGAACTTACCGCTGGATGGCACCTGAAATGATCAAAGAAAAACACCACACTAAGAAAGTTGATGTTTATAGCTTTGGCATTGTCTTATGGGAGCTCTTAACTGCATTGACACCATTTGATAACATGACTCCTGAACAGGCAGCATTTGCAGTCTGCCAGAAGAATGCAAGACCACCGCTGCCTTCTGCTTGCCCGCAGGCATTTCGTCATCTGATCAAGAGATGCTGGTCGAGAAATCCCAACAAGCGACCGCATTTTGATGAGATCGTTTCAATTTTGGAAACTTATGCGGAGTGTTACAATGAAGATCCAGATTTTTTTGGTCATTACGTCCCCTCGTCTAGATATACTGCTTTGCAATGCTTACCAAAATGGGTTGACCAAGAAGAAAAGGAGGTTCAGCAAGATGGGAAAGCTGAAGTTGATAAACTAAATTCTACAACCCCCTTGACTGTCAACCTTGAATCCGTTCGAGAGGAACAAGTACAAAATGCTGTGACATTCTTTTCATCTCCCAGCGTAAGGGGCTCTCCTGTCATCTATAGAAGATCTTTTCTTGAGCAGAATAGCCTTACAAAGGAGGAGATAGATGAAGCATTTAGGCGCATGCCTGCAAGCGAATATGGAGGGGTGAAGTCACCTTCAAACAATCAACTACAAGCTTCAACCCAAACTTTACAGCCTTCAGCTTCTGCACCCACTGCACCCACCACGATTGTTTCATCTACGGGTACATTGAAGGGGTCTGAATTTCATTGGTCTGGTGTACTTCTAGCTGTAGGACTGCTGTCAATTTCAGCATCTGATTTCAAATTACTTGTTTTAGAACAAAATAATTCCAAGAATGAAATCCTGGATACGCATGTTGCAGCTTCAGAAGCGGCCATTGATCTAGCAAGAGCAAGCCAGGATATGTTGAACTCAAAATATCAAGCTTTTGATGTTGAAGCACCTTCAGAAGTGGCAATTGATCTAGCAAGAGCAAGCCAGGATATTTTGAAAGAGATGCAAAAAATTGTGGAGATTGTGGGTTTATTACATATGCGACTACAGGAACTGGAGACTCTGACAAGTGTCTTTCTGGGTTCGGAAGGCGATTCAGAACGAACAAATTATTCTGGCGAAACAGCATCTGAAGCAGCAGATTCTATTCAAGCCTCTAAATCAACTGTCCAGACTGAAACATTAGCCAACAATCAGTTGGTCACACCTCCTGATATGGCTTGTGAGTGA 1983 42.71 MRNLNWFKPISINGKPGRRLSLGEYQRAVSWSKYLVSSGAEIKGEGEEEWSADMSQLFIGFKFATGRHSRIYRGVYKQRDVAIKLISQPEEDENLANFLENQFISEVALLFRLRHPNIITCLFMAACNAFSILSREEQGKMTSVFPENDKDNFIAACKKPPVFCIITEYMTGGSLRKYLHQQEPHSVPLNLVLKLALEISRGMQYLHSQGILHRDLKSENLLLGEDMCVKVADFGISCLESQCGSAKGFTGTYRWMAPEMIKEKHHTKKVDVYSFGIVLWELLTALTPFDNMTPEQAAFAVCQKNARPPLPSACPQAFRHLIKRCWSRNPNKRPHFDEIVSILETYAECYNEDPDFFGHYVPSSRYTALQCLPKWVDQEEKEVQQDGKAEVDKLNSTTPLTVNLESVREEQVQNAVTFFSSPSVRGSPVIYRRSFLEQNSLTKEEIDEAFRRMPASEYGGVKSPSNNQLQASTQTLQPSASAPTAPTTIVSSTGTLKGSEFHWSGVLLAVGLLSISASDFKLLVLEQNNSKNEILDTHVAASEAAIDLARASQDMLNSKYQAFDVEAPSEVAIDLARASQDILKEMQKIVEIVGLLHMRLQELETLTSVFLGSEGDSERTNYSGETASEAADSIQASKSTVQTETLANNQLVTPPDMACE 660
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 25948455 25954956 - CrPI670011_01g012700.1 Cre01g1270 488815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g1270 660 CDD STKc_MAP3K-like 66 343 - -
Cre01g1270 660 Pfam Protein tyrosine and serine/threonine kinase 152 343 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre01g1270 660 ProSitePatterns Serine/Threonine protein kinases active-site signature. 211 223 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre01g1270 660 Gene3D Transferase(Phosphotransferase) domain 1 151 350 - -
Cre01g1270 660 ProSiteProfiles Protein kinase domain profile. 57 347 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre01g1270 660 MobiDBLite consensus disorder prediction 460 488 - -
Cre01g1270 660 FunFam Peroxisomal membrane protein PEX14 400 460 - -
Cre01g1270 660 PRINTS Tyrosine kinase catalytic domain signature 251 261 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre01g1270 660 PRINTS Tyrosine kinase catalytic domain signature 270 292 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre01g1270 660 PRINTS Tyrosine kinase catalytic domain signature 314 336 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre01g1270 660 PRINTS Tyrosine kinase catalytic domain signature 205 223 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre01g1270 660 PRINTS Tyrosine kinase catalytic domain signature 167 180 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre01g1270 660 Pfam Pex14 N-terminal domain 408 452 IPR006785 -
Cre01g1270 660 SUPERFAMILY Protein kinase-like (PK-like) 48 352 IPR011009 -
Cre01g1270 660 Gene3D Phosphorylase Kinase; domain 1 44 134 - -
Cre01g1270 660 MobiDBLite consensus disorder prediction 456 488 - -
Cre01g1270 660 SMART serkin_6 57 347 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre01g1270 660 Gene3D - 401 460 IPR036388 -
Cre01g1270 660 PANTHER SERINE-THREONINE PROTEIN KINASE 55 344 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1270 Cre-Chr1:25948455 Cre04g1775 Cre-Chr4:35707722 4.50E-107 dispersed
Cre04g1717 Cre-Chr4:35314828 Cre01g1270 Cre-Chr1:25948455 3.20E-18 dispersed
Cre05g0591 Cre-Chr5:5258105 Cre01g1270 Cre-Chr1:25948455 6.70E-18 transposed
Cre06g2564 Cre-Chr6:33251088 Cre01g1270 Cre-Chr1:25948455 7.10E-26 transposed
Cre01g1270 Cre-Chr1:25948455 Cre10g1568 Cre-Chr10:29708353 5.20E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63820 PF07714 PK_Tyr_Ser-Thr 2.00E-56 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g1270 - - - 0.0