Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g1271 ATGTACGCGTCGTCCTCCGTTTCGATCGCAGCCCTTCCTTGCCCAAGCTTGCTTCAGCCTCCATCGAAGCCCTCCGCGTGCTTTCAAACTTCTTTCAACCGCCGCCATCTGATTACCACTCTGCTCTCTGTCTTTACCCCTTCTTTTATCGATTTTACTCTGCCCTGTTCTTCTGATTTGGTTGCTGAAGCTCGTGGTCTGTTTCAAATGCCCCCTCTTCGTCTCGTCAATCGGTACTTTCTGGTGAGGGCAGGGGAGTCTGAATTTGATAGTTTTGGAATAATTAACACAAACCCAGTTGCAAAGACATCTGTTGATAGTGGATTATCTGAGGAAGGGAAGAAGCAAACTGTTAAAGCAGCTTTTAAGTTGAAGGAAATGGGAGCCTGTGAAAATGGTTGCTGGATTTGGCCCTCTATTACACAGAGGGCTTATCAAGCAGCAGAGATTATTGCATCAGTTAATGGTGTGAATCGAAGTTATATAGTTCCTGAATACAGTTTTCTTGATGCCCGTGGACTTGGAGCTTATGAAGGCAAGAGATTGGATTCTGTGTCAGAAGTATATGCTTCAGATACCATCTCTTCAAGTATCAAACCTCCTCCAATAGATGATGGCACCCCAAACGAGAGCGTATCTGATGTCTTTGTTCGCGTAACACAACTGATGTCGATTCTCGAAACCCAATACTCTGGTGATACTATCATTATTGTCTCACCAGATTCTGATAATTTGACAGTTCTTCAAGCTGGTTTAATTGGCCTCGACTTGCGAAGGCACCATGATCTTTCCTTTGCTCCCGGGGAGGTTCGCTTCGTTGATATACGCAGCATCCCTTCCTATAAGCAACCAGCTTCAGCTTTTTTGGATATGGCTATTCGAGGAGTCGATTTCAAATGGTACGATGGGTTCTTCTTGTCGATGCTTGCTACTAGTATAATAATTGTGACCATCAATTGGAGAAGGTACAATACTTGTACGTATCCTTTGCACATATGGATTGTGGTTGATTATACTTCTGTGTTTGCATTTCGCCTTTTGCTGTTCATCGATAATGCACTTTCAGCTGGAATGGGATTAGATTTTGGATGGCAGCAGCGATATGCTCGGTTTTGTGGAAGAGTTGTGGTTCTTTCTATCCTCTCTCTATTGCTCTACCCCTTTCTATGTGCCTGGACTGTAATTGGTACCCTGTGGTTTAGAGATGCTAAAGATTGTTTGCCTGAAGAAGGACAGAAATGGGGTTTCCTCATTTGGTTGCTTTTCAGCTACTGTGCCCTCCTTTGCATTGCCTGCATGTCAGTTGGAAAGTGGCTAGCGCGTAGGCAAGCGCACTTGTTCCGTGCCCAACAAGGCATACCAGTATCAGAATATGGGGTACTGGTTGATATGATTAGAGTTCCTGATTGGGCATATGAAGCTGCAGGACTGGAAACACGAGGCATAGGCCAAGATGCTACTGGGTACCATCCCGGGCTGTTCTTAACCTCGGCTCAGAGGGAAGCTGTGGAAGCTCTCATCCAGGAACTTCCAAAGTTCAGGCTGAAGGCTGTCCCAACTGATTGCAGTGAATGCCCTATTTGCCTTGAAGAGTTCCATGTAGGGAATGAGGTCCGTGGTATGCCATGTGCTCATAATTTCCACGTTGAATGTATCGACGAGTGGCTTCGTCTGAATGTTAAATGTCCTCGATGCCGCTCCTCTGTCTTCCCAAATCTCGACCTCAGCGCTCTTTCTAACCTGCATTCAGACACAGAACAAACATCTGACAATGCTTTTGTAACAACCCAACCTTCAAGTCTATCGAGATCGACTCCAACCCGTGGAGCTCATTCCGAAAACACAACAGACCTCTATACTGACACTGCCTTAGAAGCTGTGGAGAATGGAAACTCACCTCTGCCATCTGCTTCTCCACATTGA 1923 45.66 MYASSSVSIAALPCPSLLQPPSKPSACFQTSFNRRHLITTLLSVFTPSFIDFTLPCSSDLVAEARGLFQMPPLRLVNRYFLVRAGESEFDSFGIINTNPVAKTSVDSGLSEEGKKQTVKAAFKLKEMGACENGCWIWPSITQRAYQAAEIIASVNGVNRSYIVPEYSFLDARGLGAYEGKRLDSVSEVYASDTISSSIKPPPIDDGTPNESVSDVFVRVTQLMSILETQYSGDTIIIVSPDSDNLTVLQAGLIGLDLRRHHDLSFAPGEVRFVDIRSIPSYKQPASAFLDMAIRGVDFKWYDGFFLSMLATSIIIVTINWRRYNTCTYPLHIWIVVDYTSVFAFRLLLFIDNALSAGMGLDFGWQQRYARFCGRVVVLSILSLLLYPFLCAWTVIGTLWFRDAKDCLPEEGQKWGFLIWLLFSYCALLCIACMSVGKWLARRQAHLFRAQQGIPVSEYGVLVDMIRVPDWAYEAAGLETRGIGQDATGYHPGLFLTSAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEVRGMPCAHNFHVECIDEWLRLNVKCPRCRSSVFPNLDLSALSNLHSDTEQTSDNAFVTTQPSSLSRSTPTRGAHSENTTDLYTDTALEAVENGNSPLPSASPH 640
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 25962521 25971197 - CrPI670011_01g012710.1 Cre01g1271 488816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g1271 640 FunFam E3 ubiquitin-protein ligase SIS3 493 571 - -
Cre01g1271 640 Pfam Ring finger domain 524 566 IPR001841 -
Cre01g1271 640 SMART ring_2 525 565 IPR001841 -
Cre01g1271 640 Gene3D - 77 284 IPR029033 -
Cre01g1271 640 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 494 571 IPR013083 -
Cre01g1271 640 ProSiteProfiles Zinc finger RING-type profile. 525 566 IPR001841 -
Cre01g1271 640 MobiDBLite consensus disorder prediction 587 617 - -
Cre01g1271 640 SUPERFAMILY RING/U-box 507 574 - -
Cre01g1271 640 Pfam Histidine phosphatase superfamily (branch 1) 80 274 IPR013078 -
Cre01g1271 640 SUPERFAMILY Phosphoglycerate mutase-like 78 275 IPR029033 -
Cre01g1271 640 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 291 633 IPR044793 GO:0004842(InterPro)|GO:0010182(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1271 Cre-Chr1:25962521 Cre05g0161 Cre-Chr5:1654112 3.80E-10 dispersed
Cre01g1271 Cre-Chr1:25962521 Cre06g2561 Cre-Chr6:33222737 3.60E-162 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g1271 K16284 - csv:101222360 694.115