Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g1271 ATGTACGCGTCGTCCTCCGTTTCGATCGCAGCCCTTCCTTGCCCAAGCTTGCTTCAGCCTCCATCGAAGCCCTCCGCGTGCTTTCAAACTTCTTTCAACCGCCGCCATCTGATTACCACTCTGCTCTCTGTCTTTACCCCTTCTTTTATCGATTTTACTCTGCCCTGTTCTTCTGATTTGGTTGCTGAAGCTCGTGGTCTGTTTCAAATGCCCCCTCTTCGTCTCGTCAATCGGTACTTTCTGGTGAGGGCAGGGGAGTCTGAATTTGATAGTTTTGGAATAATTAACACAAACCCAGTTGCAAAGACATCTGTTGATAGTGGATTATCTGAGGAAGGGAAGAAGCAAACTGTTAAAGCAGCTTTTAAGTTGAAGGAAATGGGAGCCTGTGAAAATGGTTGCTGGATTTGGCCCTCTATTACACAGAGGGCTTATCAAGCAGCAGAGATTATTGCATCAGTTAATGGTGTGAATCGAAGTTATATAGTTCCTGAATACAGTTTTCTTGATGCCCGTGGACTTGGAGCTTATGAAGGCAAGAGATTGGATTCTGTGTCAGAAGTATATGCTTCAGATACCATCTCTTCAAGTATCAAACCTCCTCCAATAGATGATGGCACCCCAAACGAGAGCGTATCTGATGTCTTTGTTCGCGTAACACAACTGATGTCGATTCTCGAAACCCAATACTCTGGTGATACTATCATTATTGTCTCACCAGATTCTGATAATTTGACAGTTCTTCAAGCTGGTTTAATTGGCCTCGACTTGCGAAGGCACCATGATCTTTCCTTTGCTCCCGGGGAGGTTCGCTTCGTTGATATACGCAGCATCCCTTCCTATAAGCAACCAGCTTCAGCTTTTTTGGATATGGCTATTCGAGGAGTCGATTTCAAATGGTACGATGGGTTCTTCTTGTCGATGCTTGCTACTAGTATAATAATTGTGACCATCAATTGGAGAAGGTACAATACTTGTACGTATCCTTTGCACATATGGATTGTGGTTGATTATACTTCTGTGTTTGCATTTCGCCTTTTGCTGTTCATCGATAATGCACTTTCAGCTGGAATGGGATTAGATTTTGGATGGCAGCAGCGATATGCTCGGTTTTGTGGAAGAGTTGTGGTTCTTTCTATCCTCTCTCTATTGCTCTACCCCTTTCTATGTGCCTGGACTGTAATTGGTACCCTGTGGTTTAGAGATGCTAAAGATTGTTTGCCTGAAGAAGGACAGAAATGGGGTTTCCTCATTTGGTTGCTTTTCAGCTACTGTGCCCTCCTTTGCATTGCCTGCATGTCAGTTGGAAAGTGGCTAGCGCGTAGGCAAGCGCACTTGTTCCGTGCCCAACAAGGCATACCAGTATCAGAATATGGGGTACTGGTTGATATGATTAGAGTTCCTGATTGGGCATATGAAGCTGCAGGACTGGAAACACGAGGCATAGGCCAAGATGCTACTGGGTACCATCCCGGGCTGTTCTTAACCTCGGCTCAGAGGGAAGCTGTGGAAGCTCTCATCCAGGAACTTCCAAAGTTCAGGCTGAAGGCTGTCCCAACTGATTGCAGTGAATGCCCTATTTGCCTTGAAGAGTTCCATGTAGGGAATGAGGTCCGTGGTATGCCATGTGCTCATAATTTCCACGTTGAATGTATCGACGAGTGGCTTCGTCTGAATGTTAAATGTCCTCGATGCCGCTCCTCTGTCTTCCCAAATCTCGACCTCAGCGCTCTTTCTAACCTGCATTCAGACACAGAACAAACATCTGACAATGCTTTTGTAACAACCCAACCTTCAAGTCTATCGAGATCGACTCCAACCCGTGGAGCTCATTCCGAAAACACAACAGACCTCTATACTGACACTGCCTTAGAAGCTGTGGAGAATGGAAACTCACCTCTGCCATCTGCTTCTCCACATTGA 1923 45.66 MYASSSVSIAALPCPSLLQPPSKPSACFQTSFNRRHLITTLLSVFTPSFIDFTLPCSSDLVAEARGLFQMPPLRLVNRYFLVRAGESEFDSFGIINTNPVAKTSVDSGLSEEGKKQTVKAAFKLKEMGACENGCWIWPSITQRAYQAAEIIASVNGVNRSYIVPEYSFLDARGLGAYEGKRLDSVSEVYASDTISSSIKPPPIDDGTPNESVSDVFVRVTQLMSILETQYSGDTIIIVSPDSDNLTVLQAGLIGLDLRRHHDLSFAPGEVRFVDIRSIPSYKQPASAFLDMAIRGVDFKWYDGFFLSMLATSIIIVTINWRRYNTCTYPLHIWIVVDYTSVFAFRLLLFIDNALSAGMGLDFGWQQRYARFCGRVVVLSILSLLLYPFLCAWTVIGTLWFRDAKDCLPEEGQKWGFLIWLLFSYCALLCIACMSVGKWLARRQAHLFRAQQGIPVSEYGVLVDMIRVPDWAYEAAGLETRGIGQDATGYHPGLFLTSAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEVRGMPCAHNFHVECIDEWLRLNVKCPRCRSSVFPNLDLSALSNLHSDTEQTSDNAFVTTQPSSLSRSTPTRGAHSENTTDLYTDTALEAVENGNSPLPSASPH 640
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 25962521 25971197 - CrPI670011_01g012710.1 Cre01g1271 488816

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g1271 640 FunFam E3 ubiquitin-protein ligase SIS3 493 571 - -
Cre01g1271 640 Pfam Ring finger domain 524 566 IPR001841 -
Cre01g1271 640 SMART ring_2 525 565 IPR001841 -
Cre01g1271 640 Gene3D - 77 284 IPR029033 -
Cre01g1271 640 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 494 571 IPR013083 -
Cre01g1271 640 ProSiteProfiles Zinc finger RING-type profile. 525 566 IPR001841 -
Cre01g1271 640 MobiDBLite consensus disorder prediction 587 617 - -
Cre01g1271 640 SUPERFAMILY RING/U-box 507 574 - -
Cre01g1271 640 Pfam Histidine phosphatase superfamily (branch 1) 80 274 IPR013078 -
Cre01g1271 640 SUPERFAMILY Phosphoglycerate mutase-like 78 275 IPR029033 -
Cre01g1271 640 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 291 633 IPR044793 GO:0004842(InterPro)|GO:0010182(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g1271 K16284 - - csv:101222360 694.115
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1271 Cre-Chr1:25962521 Cre05g0161 Cre-Chr5:1654112 3.80E-10 dispersed
Cre01g1271 Cre-Chr1:25962521 Cre06g2561 Cre-Chr6:33222737 3.60E-162 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g735 . . . . Bpe12g00593 . . . . Cmo18g00124 Cma10g00129 Cma11g00101 Car10g00121 Car11g00100 Sed08g0132 Cpe20g00235 . Bhi02g00435 Tan09g2237 Cmetu02g1086 . Hepe09g0195 . . Cla06g01657 Cam06g1842 Cec06g1893 Cco06g1898 Clacu06g1802 . Cre06g2561 . . . Cone19ag0136 . Csa01g00843 Chy12g01273 . . . . . . . . Bma08g00169 . Cmo10g00136 Cmo11g00101 . . Car13g00734 Car18g00155 Cpe09g01032 Cpe18g00841 Bhi08g01598 . . Lac10g0440 . . . Cla01g01293 Cam01g1437 Cec01g1471 Cco01g1455 Clacu01g1360 Cmu01g1265 Cre01g1271 Lsi06g01547 Csa01g00157 Chy02g02573 Cme02g01963
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre08g0424 . 77 566 C3H Transcription Factor Family AT2G31510 76.0 9.4e-227 783.1
Cre11g1362 . 5 286 C3H Transcription Factor Family AT2G31510 78.7 5.5e-126 448.4
Cre08g0424 . 60 522 C3H Transcription Factor Family AT2G31770 59.7 4.5e-169 591.7
Cre11g1362 . 13 245 C3H Transcription Factor Family AT2G31770 59.7 1.4e-77 287.7
Cre08g0424 . 60 529 C3H Transcription Factor Family AT2G31760 58.3 6.7e-167 584.3
Cre11g1362 . 13 245 C3H Transcription Factor Family AT2G31760 58.4 3.2e-76 283.1
Cre04g1144 . 8 169 C3H Transcription Factor Family AT5G06490 54.6 2.1e-47 186.0
Cre04g1144 . 8 169 C3H Transcription Factor Family AT5G06490 54.6 2.1e-47 186.0
Cre11g0982 . 1 226 C3H Transcription Factor Family AT3G02290 62.8 5.5e-76 281.2
Cre06g1931 . 43 347 C3H Transcription Factor Family AT1G11020 75.3 4.3e-135 478.0
Cre07g1824 . 62 221 C3H Transcription Factor Family AT1G50440 75.6 4.3e-68 255.0
Cre04g0306 . 2 362 C3H Transcription Factor Family AT5G08750 61.2 3.9e-121 431.8
Cre10g1081 . 1 534 C3H Transcription Factor Family AT3G16090 61.9 1.1e-169 593.6
Cre11g0982 . 1 225 C3H Transcription Factor Family AT5G38895 58.0 4.8e-73 271.9
Cre08g1481 . 16 227 C3H Transcription Factor Family AT1G19310 66.8 1.4e-79 293.1
Cre04g1247 . 40 249 C3H Transcription Factor Family AT1G19310 59.4 8.3e-69 257.3
Cre04g1526 . 9 323 C3H Transcription Factor Family AT2G22120 83.6 3.7e-159 558.1
Cre08g1007 . 70 177 C3H Transcription Factor Family AT5G07040 67.6 3.4e-40 161.8
Cre06g2366 . 30 415 C3H Transcription Factor Family AT1G18470 75.6 4.2e-175 611.3
Cre09g1932 . 121 352 C3H Transcription Factor Family AT1G68200 50.6 2.4e-50 196.4
Cre08g0424 . 60 522 C3H Transcription Factor Family AT2G31770 59.7 4.5e-169 591.7
Cre11g1362 . 13 245 C3H Transcription Factor Family AT2G31770 59.7 1.4e-77 287.7
Cre08g0424 . 60 529 C3H Transcription Factor Family AT2G31760 58.3 6.7e-167 584.3
Cre11g1362 . 13 245 C3H Transcription Factor Family AT2G31760 58.4 3.2e-76 283.1
Cre07g0431 . 1118 1465 C3H Transcription Factor Family AT2G30580 50.9 2.8e-81 299.3
Cre01g0328 . 46 278 C3H Transcription Factor Family AT5G55970 68.2 3.6e-94 342.0
Cre04g0306 . 2 362 C3H Transcription Factor Family AT5G63780 57.5 6.6e-116 414.5
Cre10g1877 . 1 426 C3H Transcription Factor Family AT3G58030 52.8 2.8e-105 379.4
Cre01g0328 . 35 347 C3H Transcription Factor Family AT4G26580 61.5 5.8e-111 397.9
Cre04g0718 . 69 533 C3H Transcription Factor Family AT5G01960 68.5 1.6e-166 582.8
Cre07g0915 . 1 484 C3H Transcription Factor Family AT5G01960 57.7 4.8e-150 528.1
Cre02g1390 . 1 155 C3H Transcription Factor Family AT2G04240 59.3 1.5e-43 172.9
Cre02g0637 . 1 149 C3H Transcription Factor Family AT2G04240 58.4 5.4e-38 154.5
Cre02g2593 . 1 242 C3H Transcription Factor Family AT5G19430 52.4 3.8e-62 235.3
Cre07g1478 . 130 577 C3H Transcription Factor Family AT5G45290 52.7 5.6e-103 372.1
Cre02g2593 . 40 242 C3H Transcription Factor Family AT5G12310 55.8 2.2e-57 219.5
Cre06g2263 . 131 425 C3H Transcription Factor Family AT5G05810 52.5 4.1e-74 275.8
Cre11g1124 . 53 204 C3H Transcription Factor Family AT5G05830 59.2 2.6e-45 179.1
Cre10g2275 . 70 213 C3H Transcription Factor Family AT5G05830 57.6 4.1e-43 171.8
Cre04g0837 . 451 581 C3H Transcription Factor Family AT5G05830 61.1 9.6e-40 160.6
Cre06g1709 . 30 426 C3H Transcription Factor Family AT4G28890 50.5 2.3e-96 349.7
Cre11g0982 . 1 226 C3H Transcription Factor Family AT5G15790 59.9 5.2e-74 274.6
Cre11g1155 . 476 747 C3H Transcription Factor Family AT3G55530 80.2 2.1e-114 409.1
Cre09g0639 . 27 299 C3H Transcription Factor Family AT1G63900 75.5 1.0e-116 416.8
Cre05g0362 . 26 408 C3H Transcription Factor Family AT2G44580 53.5 6.7e-119 424.5
Cre08g1481 . 25 150 C3H Transcription Factor Family AT1G74990 59.8 9.9e-41 163.3
Cre05g1763 . 3 314 C3H Transcription Factor Family AT5G20910 63.8 5.4e-111 397.9
Cre10g1081 . 119 534 C3H Transcription Factor Family AT1G65040 56.0 2.0e-113 406.0
Cre04g1247 . 41 251 C3H Transcription Factor Family AT2G23780 61.6 3.3e-73 271.9
Cre08g1481 . 6 229 C3H Transcription Factor Family AT2G23780 57.0 7.6e-70 260.8
Cre10g1754 . 1 317 C3H Transcription Factor Family AT3G10810 54.2 5.8e-83 305.4
Cre09g2271 . 1 170 C3H Transcription Factor Family AT1G63840 56.1 2.1e-45 179.1
Cre09g1874 . 18 353 C3H Transcription Factor Family AT1G68070 63.7 3.3e-117 418.7
Cre11g2285 . 4 182 C3H Transcription Factor Family AT1G76410 55.2 2.9e-51 198.7
Cre10g0275 . 1 159 C3H Transcription Factor Family AT1G76410 56.3 5.3e-45 177.9
Cre08g1229 . 1 410 C3H Transcription Factor Family AT1G80400 54.0 2.9e-112 402.5
Cre10g0275 . 1 150 C3H Transcription Factor Family AT2G17450 57.5 5.6e-39 157.9
Cre08g0424 . 77 566 C3H Transcription Factor Family AT2G31510 76.0 9.4e-227 783.1
Cre11g1362 . 5 286 C3H Transcription Factor Family AT2G31510 78.7 5.5e-126 448.4
Cre04g1144 . 7 168 C3H Transcription Factor Family AT2G35910 63.4 4.3e-54 208.4
Cre10g1934 . 15 161 C3H Transcription Factor Family AT2G35910 51.0 5.4e-41 164.9
Cre04g0159 . 1 302 C3H Transcription Factor Family AT2G41980 78.8 3.9e-146 514.6
Cre05g1081 . 659 916 C3H Transcription Factor Family AT2G41980 80.6 1.6e-128 456.1
Cre02g2680 . 106 402 C3H Transcription Factor Family AT2G41980 71.8 4.0e-127 451.4
Cre09g1760 . 48 305 C3H Transcription Factor Family AT2G41980 79.1 1.3e-125 446.4
Cre06g0897 . 43 301 C3H Transcription Factor Family AT2G41980 75.3 2.7e-123 438.7
Cre05g2840 . 158 408 C3H Transcription Factor Family AT2G41980 79.3 6.7e-122 434.1
Cre05g0667 . 119 393 C3H Transcription Factor Family AT3G06140 63.1 2.8e-95 345.9
Cre10g2149 . 33 329 C3H Transcription Factor Family AT3G09770 59.0 1.1e-85 313.9
Cre06g2561 . 58 352 C3H Transcription Factor Family AT3G47990 72.1 4.0e-127 451.4
Cre01g1271 . 348 639 C3H Transcription Factor Family AT3G47990 70.2 9.5e-121 430.3
Cre11g2285 . 4 185 C3H Transcription Factor Family AT1G20823 56.0 4.7e-52 201.4
Cre10g0275 . 1 159 C3H Transcription Factor Family AT1G20823 58.0 1.3e-46 183.3
Cre01g0677 . 38 406 C3H Transcription Factor Family AT3G18930 54.4 3.3e-84 309.3
Cre10g0309 . 20 235 C3H Transcription Factor Family AT5G66070 74.5 7.6e-75 277.3
Cre10g2184 . 3 273 C3H Transcription Factor Family AT5G02750 53.0 2.6e-67 252.7
Cre06g2366 . 34 467 C3H Transcription Factor Family AT1G73950 68.0 2.8e-166 582.0
Cre08g0157 . 1 160 C3H Transcription Factor Family AT1G33480 50.6 7.9e-39 157.9
Cre09g1874 . 15 251 C3H Transcription Factor Family AT2G01735 60.4 3.3e-74 275.4
Cre10g0593 . 60 269 C3H Transcription Factor Family AT2G01735 53.3 4.6e-52 201.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002467 0 5 1 1 1 2 4 2 2 2 1 2 2 1 2 3 1 1 3 2 2 2 2 2 2 1 1 7 3 1 61