Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g1282 ATGTCAAGATTTTCAAATGAAATGAAGCAGAAAGATGGTTATCTGATATACCCATCTCCTCTTTCTCCTTTTGATGGTGGCACTGATCCAAAATCAAATGATTCTACACCATCATCGTCTTCTTCTTCTTCTTCTTCTTTCAGCAGCATCAGCCCAATCCTTCTTCTAGTTATAGTAATTCTAGCAGTCATCTTCTTCATCTCTGGTTTACTCCATTTGCTCGTTCGATTTCTGCTAAAAAGATCTTCCTCATCAATCTACCAATCCAATCGATACCCAGAAAGGCCTGGATCTCACACACTCCAACGACAGCTCCAACAGCTCTTTCGCCTTCACGATTCAGGACTCGACCAAGCCTTCATCGACGCTTTGCCAGTGTTCTTGTACAAAGATATTATGGGTTTAAAAGAGCCATTCGATTGCGCCGTTTGTCTCTACGAATTTTCCGACCAGGACAGGCTGAGATTGCTCCCTATCTGCAGCCATGCTTTTCATATCAATTGCATAGACACATGGCTACTCTCTAACTCCACATGTCCTCTCTGCCGAGCCACCCTTTTGGGCTCTAGTTTTCCTTCCGAAAACCCTAATCCGAACGAGATTTTAGGGCAAGAAAACAGTTGTCACAGACAACCAGAAAACGCCGTTTCTGGAGATCATCAGAAACAAGCAACAACATTGGAGGAATCTACAGGGGAAATGAGAGTGTTGTCCGTGAGACTCGGGAAGTTCAAGAGAATAAACAGCGAAGAAGATGATGATGAAGAACAAAAAGAAGAGAAAGGAGAGAGCAGTAGCCAAAATAACCTAAACGCGAGAAGATGCTACTCAATGGGAACTTACCAATACGTTGTTGGAGATTCAGATTTACAGGTGATGAAGGAGAAATTAAACCCTGAAAATCTTCGGGGAAATGGGGAAATAGAAGGGAAGAAAATCAGTGGGAGAAGTAAAGGGGAAAGTTTCTCGGTATCGAAGATTTGGCAATGGTCGACGAAGAGTGGATTGCCAATTCCGAGCAGCTCAAACAATCAATGGAAGCCGGAACTTGTCTGA 1056 43.18 MSRFSNEMKQKDGYLIYPSPLSPFDGGTDPKSNDSTPSSSSSSSSSFSSISPILLLVIVILAVIFFISGLLHLLVRFLLKRSSSSIYQSNRYPERPGSHTLQRQLQQLFRLHDSGLDQAFIDALPVFLYKDIMGLKEPFDCAVCLYEFSDQDRLRLLPICSHAFHINCIDTWLLSNSTCPLCRATLLGSSFPSENPNPNEILGQENSCHRQPENAVSGDHQKQATTLEESTGEMRVLSVRLGKFKRINSEEDDDEEQKEEKGESSSQNNLNARRCYSMGTYQYVVGDSDLQVMKEKLNPENLRGNGEIEGKKISGRSKGESFSVSKIWQWSTKSGLPIPSSSNNQWKPELV 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26068842 26069897 - CrPI670011_01g012820.1 Cre01g1282 488827

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g1282 351 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 188 IPR013083 -
Cre01g1282 351 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 45 333 - GO:0031625(PANTHER)
Cre01g1282 351 MobiDBLite consensus disorder prediction 297 316 - -
Cre01g1282 351 FunFam RING-H2 finger protein ATL46 103 188 - -
Cre01g1282 351 SMART ring_2 141 182 IPR001841 -
Cre01g1282 351 MobiDBLite consensus disorder prediction 26 47 - -
Cre01g1282 351 Pfam Ring finger domain 140 183 IPR001841 -
Cre01g1282 351 MobiDBLite consensus disorder prediction 210 232 - -
Cre01g1282 351 MobiDBLite consensus disorder prediction 247 271 - -
Cre01g1282 351 MobiDBLite consensus disorder prediction 297 322 - -
Cre01g1282 351 MobiDBLite consensus disorder prediction 1 47 - -
Cre01g1282 351 ProSiteProfiles Zinc finger RING-type profile. 141 183 IPR001841 -
Cre01g1282 351 CDD RING-H2_EL5-like 140 183 - -
Cre01g1282 351 SUPERFAMILY RING/U-box 120 187 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g1282 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1282 Cre-Chr1:26068842 Cre06g2160 Cre-Chr6:29436629 4.90E-44 dispersed
Cre01g1276 Cre-Chr1:26031937 Cre01g1282 Cre-Chr1:26068842 2.50E-12 proximal
Cre01g0572 Cre-Chr1:5023954 Cre01g1282 Cre-Chr1:26068842 1.50E-78 wgd
Cre01g1282 Cre-Chr1:26068842 Cre05g2682 Cre-Chr5:37777964 2.80E-71 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g713 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone2ag0138 Cone16ag0916 Lsi02g00357 Csa01g00833 Chy12g01285 Cme12g01710 . . . . . . . . Sed08g2492 . . . Cma18g00156 . Car18g00149 Cpe09g01038 . Bhi08g01585 Tan05g2030 Cmetu12g1860 Lac10g0429 Hepe07g2243 . . Cla01g01388 Cam01g1447 Cec01g1483 . Clacu01g1470 Cmu01g1365 Cre01g1282 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013813 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 2 1 0 25