Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g1290 ATGACTTTCCCTTTCCCTTTACTTTTCCTCATTACTATCACCATCTCCTTTTCCCTCCCCTTCCCCTCTCTTGTTCACTCCAAACTCACCCTTGGTTATTACCAAAAAACATGTCCTGACTTCGAGAAGATCATTCGCGAAACTGTCACCAATAAACAAATCACTAGCCCTGTCACTGCCGCTGGAACCCTTCGCCTCTTCTTCCACGACTGCATGGTTGATGGTTGCGACGCCTCCATCCTCATTTCCTCCAACTCCTTCAACCAAGCCGAGCGTGAGGCTGAAATCAACCATTCCCTCTCTGGTGACGCCTTCGACGTCGTCGTCCATGCTAAGACCAACCTCGAACTTGCTTGCCCTGGCATTGTCTCTTGTTCCGACATCTTGGCACAGGCAACTCGAGATTTAGTGGTGATGGTGGGAGGACCATTCTACAACGTTCGATTGGGGAGAAAAGATGGAATGTTATCAAAAGTAGAAAACGTGGAAGAGAACCTTCCAAAAGTGGACTTCTCAATAGACAAACTCATCGATTTCTTCACCCAAAGAGGCTTCACCATCCAAGAACTAGTCGCCCTCTCCGGAGGCCACACCATCGGCTTCTCCCATTGCAAGGAATTCTCCGACCGCCTCTTTAACTTCAACGCCATGTCACCCACCGACCCCGACATTTACCCCAAATTCGCCGAAAAGCTCAAGGCCATGTGTGCCAATTACCTCACAGACACTGCCATGTCAGCTTTCAACGACGTCATGACACCTGGCAAATTCGACAACATGTACTTCCAAAATCTTCCACGTGGCCTTGGCCTACTCGCCACTGACAACGCCCTCTTTAAAGATCCTAGGACCAAGCCGTTTGTGGATCTTTACGCCGTTAATCAAACGGCATTTTTTAAGGACTTTGCTCACGCAATGGAGAAGCTCAGCGTTTACGGCGTTAAGACGGGAAGGAAAGGGGAGGTTCGACGAAGGTGTGACCTCTTTAATTCCATTCAGACATGA 1005 48.96 MTFPFPLLFLITITISFSLPFPSLVHSKLTLGYYQKTCPDFEKIIRETVTNKQITSPVTAAGTLRLFFHDCMVDGCDASILISSNSFNQAEREAEINHSLSGDAFDVVVHAKTNLELACPGIVSCSDILAQATRDLVVMVGGPFYNVRLGRKDGMLSKVENVEENLPKVDFSIDKLIDFFTQRGFTIQELVALSGGHTIGFSHCKEFSDRLFNFNAMSPTDPDIYPKFAEKLKAMCANYLTDTAMSAFNDVMTPGKFDNMYFQNLPRGLGLLATDNALFKDPRTKPFVDLYAVNQTAFFKDFAHAMEKLSVYGVKTGRKGEVRRRCDLFNSIQT 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26128940 26130220 + CrPI670011_01g012900.1 Cre01g1290 488835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g1290 334 Pfam Peroxidase 46 293 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre01g1290 334 Gene3D - 32 330 - -
Cre01g1290 334 ProSitePatterns Peroxidases proximal heme-ligand signature. 189 199 IPR019793 -
Cre01g1290 334 CDD secretory_peroxidase 28 329 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Cre01g1290 334 PRINTS Haem peroxidase superfamily signature 60 74 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre01g1290 334 PRINTS Haem peroxidase superfamily signature 123 140 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre01g1290 334 PRINTS Haem peroxidase superfamily signature 189 204 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre01g1290 334 PRINTS Haem peroxidase superfamily signature 141 153 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre01g1290 334 PRINTS Haem peroxidase superfamily signature 250 265 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre01g1290 334 FunFam Peroxidase 167 309 - -
Cre01g1290 334 SUPERFAMILY Heme-dependent peroxidases 29 330 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre01g1290 334 ProSiteProfiles Plant heme peroxidase family profile. 28 330 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre01g1290 334 Gene3D Peroxidase, domain 2 167 309 - -
Cre01g1290 334 ProSitePatterns Peroxidases active site signature. 60 71 IPR019794 GO:0004601(InterPro)
Cre01g1290 334 PRINTS Plant peroxidase signature 62 82 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre01g1290 334 PRINTS Plant peroxidase signature 141 156 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre01g1290 334 PRINTS Plant peroxidase signature 188 200 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre01g1290 334 PRINTS Plant peroxidase signature 248 263 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre01g1290 334 PRINTS Plant peroxidase signature 304 317 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre01g1290 334 PRINTS Plant peroxidase signature 38 57 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre01g1290 334 PRINTS Plant peroxidase signature 122 132 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre01g1290 334 PRINTS Plant peroxidase signature 103 116 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre01g1290 334 PRINTS Plant peroxidase signature 264 281 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre01g1290 334 FunFam Peroxidase 32 177 - -
Cre01g1290 334 PANTHER - 16 330 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1290 Cre-Chr1:26128940 Cre04g1364 Cre-Chr4:32468319 3.20E-77 dispersed
Cre03g0930 Cre-Chr3:8082102 Cre01g1290 Cre-Chr1:26128940 2.70E-71 transposed
Cre01g0584 Cre-Chr1:5127620 Cre01g1290 Cre-Chr1:26128940 1.60E-105 wgd
Cre01g1290 Cre-Chr1:26128940 Cre10g1596 Cre-Chr10:30072817 1.20E-108 wgd
Cre01g1290 Cre-Chr1:26128940 Cre06g2540 Cre-Chr6:33040600 5.60E-122 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g1290 K00430 - csv:101220163 598.971