Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g1292 ATGGTCGGGCATGGCAATCACAGGCTGAAACTCTCCATCTTCCACCACCGATCTTCCTCAGACTCCAAACCCGAACGCCCAAAAGAGTATCCCGAAGAGTACCTCTGCCCAATTTCCAAGTCTTTAATGGCGGACCCAGTTGTCGTCTCCTCTGGTCACACCTTCGAGCGTCTCTCTGTTCAAGTTTGCCAAGATTTGGGGTTTTCGCCCAAGCTTGAAGAAGATGGTTCAAGGCCGGATTTCTCCTCTGTTATTACCAACAGAAACATGAGATTCACTATTCTCAAATGGTGCGATAATAACGGAATCGAACATCCACAGCCCCCTGATTACAGCTCCATTGAACTCATTGTTCGTCGATTAATGGAGAAGCAGAGGCAGGAGAATCGATTCGAAGCTTCTGATAGCGAGTTGATTAGAGGCGTCGCCGATAAACCGCAGGGAGTTGCTGTTCATGCGACCACCGAGGTTGGGCTACGACTCAACCGATTTCAACTCGACTCGCCGCCGCAGAAGGAGGAGATCGTACGGGAAAGTACTATTTTGCCCTTCAAAACGCAACCCTCTAGTTATGCTGCTCATTCTTCTTCCTCTTCACACGGAAGCTTCGATAGAGATCCTAATCACAGAGGATATTCTGATTCGTATTCCCCAAATTCAGAAGAAGAATCTATACTCATTTTGAAATTCAGAAGCAACGATGAATTCGAGCAACGAGAAGGAGTGATATCCCTAAGAAAATTAACTAAATCCAACGAATCGATTAGGGTTTCTTTATGCACAAAGGAATTCCTCGCCGCCCTACTTCCTTTGGTTTTGTCCCGATCTACAAATATCCAGATCAACGCAGTAGCTTCCGTCGTGAATCTCTCTCTCGAGAAACCCAACAAATTGAAGATCGTACGGGCAGGATTTGTTCCGCCATTAATCGACGTTTTAGACGGCAGAAGCGCCGAAGCTCAAGAACACGCCGCCGGTGCTCTGTTCAGTTTATCGTTAGACGACGAGAACAAAATGGCGATTGGAATTCTCGGCGCGTTACCGGTGCTGATGAATACGCTCCGATCCGACAGCGAGAGAACAAGGAACGATTCAGCTCTTTGTTTGTACCATTTGACACTAAACCCTAGCAACCGAGTTAAACTGGTGAAACTCGGCGCCGTACCGATTCTGCTGTCGTTGACGAGAATCGAAGGTTGTGCGAGCCGAATACTTCTGATTCTGTGCAATATCGCGGTCTCTGTGGACGGGAGATCGGCGATGCTGGATGCGAATGCGGTGGGTTGTTTGGTGGAGATATTGAAGGAGAAGGACATGGATTCCGAGTCGACTCGGGAGAATTGTGTGGTGGCGCTTTACGCACTGAGTCAAGGAGGATTTCGATTCAAAGGATTGGCGAAGGAGGCCGGCGCGGTGGAGGTTCTGAGAGAGGTTGAAGAGAGGGGAAGCGAGCGGGCAAGGGAAAAAGCCAAGAGGATTTTGCAGATGATGAGAACCGGCGGAAGCGGTTCGGTCGAGATTGAAGGCGTCGGCCGAAATGGGCTCGACGCTGGTGGAGTCAGCTGGACCGGTCGGGTTGGTGCTGGCTTGAACCGGTACTCTACAAATACCACTAAGTTTTGA 1623 49.41 MVGHGNHRLKLSIFHHRSSSDSKPERPKEYPEEYLCPISKSLMADPVVVSSGHTFERLSVQVCQDLGFSPKLEEDGSRPDFSSVITNRNMRFTILKWCDNNGIEHPQPPDYSSIELIVRRLMEKQRQENRFEASDSELIRGVADKPQGVAVHATTEVGLRLNRFQLDSPPQKEEIVRESTILPFKTQPSSYAAHSSSSSHGSFDRDPNHRGYSDSYSPNSEEESILILKFRSNDEFEQREGVISLRKLTKSNESIRVSLCTKEFLAALLPLVLSRSTNIQINAVASVVNLSLEKPNKLKIVRAGFVPPLIDVLDGRSAEAQEHAAGALFSLSLDDENKMAIGILGALPVLMNTLRSDSERTRNDSALCLYHLTLNPSNRVKLVKLGAVPILLSLTRIEGCASRILLILCNIAVSVDGRSAMLDANAVGCLVEILKEKDMDSESTRENCVVALYALSQGGFRFKGLAKEAGAVEVLREVEERGSERAREKAKRILQMMRTGGSGSVEIEGVGRNGLDAGGVSWTGRVGAGLNRYSTNTTKF 540
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26158037 26159659 - CrPI670011_01g012920.1 Cre01g1292 488837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g1292 540 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 345 387 IPR000225 GO:0005515(InterPro)
Cre01g1292 540 Pfam Armadillo/beta-catenin-like repeat 295 332 IPR000225 GO:0005515(InterPro)
Cre01g1292 540 Pfam Armadillo/beta-catenin-like repeat 334 373 IPR000225 GO:0005515(InterPro)
Cre01g1292 540 SMART arm_5 414 457 IPR000225 GO:0005515(InterPro)
Cre01g1292 540 SMART arm_5 334 374 IPR000225 GO:0005515(InterPro)
Cre01g1292 540 SMART arm_5 293 333 IPR000225 GO:0005515(InterPro)
Cre01g1292 540 SMART arm_5 375 413 IPR000225 GO:0005515(InterPro)
Cre01g1292 540 SMART Ubox_2 33 97 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cre01g1292 540 PANTHER U BOX DOMAIN-CONTAINING 17 499 - -
Cre01g1292 540 Gene3D - 168 401 IPR011989 -
Cre01g1292 540 Gene3D - 402 500 IPR011989 -
Cre01g1292 540 Pfam U-box domain 31 98 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cre01g1292 540 MobiDBLite consensus disorder prediction 187 202 - -
Cre01g1292 540 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 304 341 IPR000225 GO:0005515(InterPro)
Cre01g1292 540 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 106 IPR013083 -
Cre01g1292 540 ProSiteProfiles U-box domain profile. 29 104 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cre01g1292 540 SUPERFAMILY RING/U-box 16 108 - -
Cre01g1292 540 MobiDBLite consensus disorder prediction 187 218 - -
Cre01g1292 540 SUPERFAMILY ARM repeat 227 497 IPR016024 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1292 Cre-Chr1:26158037 Cre03g0473 Cre-Chr3:3130810 1.90E-10 dispersed
Cre01g0585 Cre-Chr1:5129103 Cre01g1292 Cre-Chr1:26158037 7.90E-81 wgd
Cre01g1292 Cre-Chr1:26158037 Cre06g2539 Cre-Chr6:33029358 2.90E-96 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g1292 - - - 0.0