Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre01g1292 | ATGGTCGGGCATGGCAATCACAGGCTGAAACTCTCCATCTTCCACCACCGATCTTCCTCAGACTCCAAACCCGAACGCCCAAAAGAGTATCCCGAAGAGTACCTCTGCCCAATTTCCAAGTCTTTAATGGCGGACCCAGTTGTCGTCTCCTCTGGTCACACCTTCGAGCGTCTCTCTGTTCAAGTTTGCCAAGATTTGGGGTTTTCGCCCAAGCTTGAAGAAGATGGTTCAAGGCCGGATTTCTCCTCTGTTATTACCAACAGAAACATGAGATTCACTATTCTCAAATGGTGCGATAATAACGGAATCGAACATCCACAGCCCCCTGATTACAGCTCCATTGAACTCATTGTTCGTCGATTAATGGAGAAGCAGAGGCAGGAGAATCGATTCGAAGCTTCTGATAGCGAGTTGATTAGAGGCGTCGCCGATAAACCGCAGGGAGTTGCTGTTCATGCGACCACCGAGGTTGGGCTACGACTCAACCGATTTCAACTCGACTCGCCGCCGCAGAAGGAGGAGATCGTACGGGAAAGTACTATTTTGCCCTTCAAAACGCAACCCTCTAGTTATGCTGCTCATTCTTCTTCCTCTTCACACGGAAGCTTCGATAGAGATCCTAATCACAGAGGATATTCTGATTCGTATTCCCCAAATTCAGAAGAAGAATCTATACTCATTTTGAAATTCAGAAGCAACGATGAATTCGAGCAACGAGAAGGAGTGATATCCCTAAGAAAATTAACTAAATCCAACGAATCGATTAGGGTTTCTTTATGCACAAAGGAATTCCTCGCCGCCCTACTTCCTTTGGTTTTGTCCCGATCTACAAATATCCAGATCAACGCAGTAGCTTCCGTCGTGAATCTCTCTCTCGAGAAACCCAACAAATTGAAGATCGTACGGGCAGGATTTGTTCCGCCATTAATCGACGTTTTAGACGGCAGAAGCGCCGAAGCTCAAGAACACGCCGCCGGTGCTCTGTTCAGTTTATCGTTAGACGACGAGAACAAAATGGCGATTGGAATTCTCGGCGCGTTACCGGTGCTGATGAATACGCTCCGATCCGACAGCGAGAGAACAAGGAACGATTCAGCTCTTTGTTTGTACCATTTGACACTAAACCCTAGCAACCGAGTTAAACTGGTGAAACTCGGCGCCGTACCGATTCTGCTGTCGTTGACGAGAATCGAAGGTTGTGCGAGCCGAATACTTCTGATTCTGTGCAATATCGCGGTCTCTGTGGACGGGAGATCGGCGATGCTGGATGCGAATGCGGTGGGTTGTTTGGTGGAGATATTGAAGGAGAAGGACATGGATTCCGAGTCGACTCGGGAGAATTGTGTGGTGGCGCTTTACGCACTGAGTCAAGGAGGATTTCGATTCAAAGGATTGGCGAAGGAGGCCGGCGCGGTGGAGGTTCTGAGAGAGGTTGAAGAGAGGGGAAGCGAGCGGGCAAGGGAAAAAGCCAAGAGGATTTTGCAGATGATGAGAACCGGCGGAAGCGGTTCGGTCGAGATTGAAGGCGTCGGCCGAAATGGGCTCGACGCTGGTGGAGTCAGCTGGACCGGTCGGGTTGGTGCTGGCTTGAACCGGTACTCTACAAATACCACTAAGTTTTGA | 1623 | 49.41 | MVGHGNHRLKLSIFHHRSSSDSKPERPKEYPEEYLCPISKSLMADPVVVSSGHTFERLSVQVCQDLGFSPKLEEDGSRPDFSSVITNRNMRFTILKWCDNNGIEHPQPPDYSSIELIVRRLMEKQRQENRFEASDSELIRGVADKPQGVAVHATTEVGLRLNRFQLDSPPQKEEIVRESTILPFKTQPSSYAAHSSSSSHGSFDRDPNHRGYSDSYSPNSEEESILILKFRSNDEFEQREGVISLRKLTKSNESIRVSLCTKEFLAALLPLVLSRSTNIQINAVASVVNLSLEKPNKLKIVRAGFVPPLIDVLDGRSAEAQEHAAGALFSLSLDDENKMAIGILGALPVLMNTLRSDSERTRNDSALCLYHLTLNPSNRVKLVKLGAVPILLSLTRIEGCASRILLILCNIAVSVDGRSAMLDANAVGCLVEILKEKDMDSESTRENCVVALYALSQGGFRFKGLAKEAGAVEVLREVEERGSERAREKAKRILQMMRTGGSGSVEIEGVGRNGLDAGGVSWTGRVGAGLNRYSTNTTKF | 540 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 26158037 | 26159659 | - | CrPI670011_01g012920.1 | Cre01g1292 | 488837 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre01g1292 | 540 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 345 | 387 | IPR000225 | GO:0005515(InterPro) | |
Cre01g1292 | 540 | Pfam | Armadillo/beta-catenin-like repeat | 295 | 332 | IPR000225 | GO:0005515(InterPro) | |
Cre01g1292 | 540 | Pfam | Armadillo/beta-catenin-like repeat | 334 | 373 | IPR000225 | GO:0005515(InterPro) | |
Cre01g1292 | 540 | SMART | arm_5 | 414 | 457 | IPR000225 | GO:0005515(InterPro) | |
Cre01g1292 | 540 | SMART | arm_5 | 334 | 374 | IPR000225 | GO:0005515(InterPro) | |
Cre01g1292 | 540 | SMART | arm_5 | 293 | 333 | IPR000225 | GO:0005515(InterPro) | |
Cre01g1292 | 540 | SMART | arm_5 | 375 | 413 | IPR000225 | GO:0005515(InterPro) | |
Cre01g1292 | 540 | SMART | Ubox_2 | 33 | 97 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Cre01g1292 | 540 | PANTHER | U BOX DOMAIN-CONTAINING | 17 | 499 | - | - | |
Cre01g1292 | 540 | Gene3D | - | 168 | 401 | IPR011989 | - | |
Cre01g1292 | 540 | Gene3D | - | 402 | 500 | IPR011989 | - | |
Cre01g1292 | 540 | Pfam | U-box domain | 31 | 98 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Cre01g1292 | 540 | MobiDBLite | consensus disorder prediction | 187 | 202 | - | - | |
Cre01g1292 | 540 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 304 | 341 | IPR000225 | GO:0005515(InterPro) | |
Cre01g1292 | 540 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 12 | 106 | IPR013083 | - | |
Cre01g1292 | 540 | ProSiteProfiles | U-box domain profile. | 29 | 104 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Cre01g1292 | 540 | SUPERFAMILY | RING/U-box | 16 | 108 | - | - | |
Cre01g1292 | 540 | MobiDBLite | consensus disorder prediction | 187 | 218 | - | - | |
Cre01g1292 | 540 | SUPERFAMILY | ARM repeat | 227 | 497 | IPR016024 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre01g1292 | Cre-Chr1:26158037 | Cre03g0473 | Cre-Chr3:3130810 | 1.90E-10 | dispersed | |
Cre01g0585 | Cre-Chr1:5129103 | Cre01g1292 | Cre-Chr1:26158037 | 7.90E-81 | wgd | |
Cre01g1292 | Cre-Chr1:26158037 | Cre06g2539 | Cre-Chr6:33029358 | 2.90E-96 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre01g1292 | - | - | - | 0.0 |