Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g1295 ATGGACATCAAGCCACGTCAATCTTGTAATATCTGCGGCGGCGGCGACGACGACTTCATGGCGGCTCTGCCATCCTCTTCCGCTTTACCGGATTCTTCTTCCTCCAGACACCATACCTACAGTAGGAAGCAGAAATCCCTTGGTCTTTTATGTTCAAACTTTTTGAGCTTGTATAACCACGATGGAGTCCATTCGATTGGGCTTGACGATGCAGCATCGCGATTAGGTGTGGAAAGGCGGCGGATCTATGATATTGTGAATGTTTTGGAGAGCGTCGGGGTTCTGTCGAGAAAGGCGAAGAATCAGTACAGCTGGAATGGGTTTGGAGCAATCCCTAAGGCCTTACAAGATCTTAAAGAAGAGGGCTTGAGGGAGAATTGCAGTGCATCCGATGGTAACGATTATGCGAAAGTATCGGATGATGAAGATGAGGATGAAAGATTTTCCAATCCAACCGGAAGCCAGACCTCAACTGCAGCTGTGCCAAAATCATCTTCATCATCATTAAAAGCCGACAATAGAAGGGAAAAGTCTTTGGCGCTCCTGACGCAAAATTTTGTTAAGCTATTTATCTGCAGTCATGTGAATATGATTTCCCTTGATGAAGCTGCTAAGCTTTTATTAGGAGATGGCCACAATTCATCAATAATGAGAACAAAAGTAAGGAGGCTATATGACATTGCAAATGTGCTGTCTTCTATGAATCTGATTGAAAAGACCCATACAACAGATACTAGAAAGCCTGCTTTTAGGTGGTTGGGAGTGAGGGGTAAAGTCAAGAATGAGCCTACCATTCTTACAGAGTCCAGAAAAAGAGCATTTGGAACTGATGTAACTAATGTCAGTTATAAGAAGACTAAAGCTGAAAGTTCAGCGTATCAGGGTTTAAATCATTGCCTCAACATGCAAAAGCTAGTGCAGTGTGAGAATTCTTCGCAAGAGGATAGCCAAAATAGTCAGGAACAAGAATATGAACGAACTTCCAAGAGCTATCAATTTGGACCCTTTGCTCCGGTAACAGTAGCTAAAGTTGGTGTCTCAGACAATAACAATACGAAGCGGACTCATGACTGGGAAAGCCTTTCCTCAACATTCCGTCCTCAGTATCACAATCAAGCCTTAAACGAACTTTTCTCCCATTACGTGGAAGCTTGGAAATCATGGTTTCTGGATGCAATTCTTGTGAAAGTAATTGAATGCAAAGAAAAATTCCAAATCAGAGATGTTGGCTTATCGATTCTGGATGGTCTTCTGGTACTTGTTCTTTATCCACGCCTTGCTGTTTGTTTCCTTCCACTTGTTTCATGCCATATAATTTCTGAAGTCCCACAGGATTCTTTTCCTTTTCATCCTGCTGAACTATCCTGGGAAAATAAATTTTGGAGAAATCAAGAGAAAATAGATGGCAGTGGTTAG 1416 42.3 MDIKPRQSCNICGGGDDDFMAALPSSSALPDSSSSRHHTYSRKQKSLGLLCSNFLSLYNHDGVHSIGLDDAASRLGVERRRIYDIVNVLESVGVLSRKAKNQYSWNGFGAIPKALQDLKEEGLRENCSASDGNDYAKVSDDEDEDERFSNPTGSQTSTAAVPKSSSSSLKADNRREKSLALLTQNFVKLFICSHVNMISLDEAAKLLLGDGHNSSIMRTKVRRLYDIANVLSSMNLIEKTHTTDTRKPAFRWLGVRGKVKNEPTILTESRKRAFGTDVTNVSYKKTKAESSAYQGLNHCLNMQKLVQCENSSQEDSQNSQEQEYERTSKSYQFGPFAPVTVAKVGVSDNNNTKRTHDWESLSSTFRPQYHNQALNELFSHYVEAWKSWFLDAILVKVIECKEKFQIRDVGLSILDGLLVLVLYPRLAVCFLPLVSCHIISEVPQDSFPFHPAELSWENKFWRNQEKIDGSG 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26200078 26204039 - CrPI670011_01g012950.1 Cre01g1295 488840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g1295 471 SMART E2F_TDP_2 42 107 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cre01g1295 471 SMART E2F_TDP_2 174 254 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cre01g1295 471 PANTHER TRANSCRIPTION FACTOR E2F 26 376 IPR015633 GO:0000978(InterPro)|GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro)|GO:0090575(PANTHER)
Cre01g1295 471 SUPERFAMILY Winged helix DNA-binding domain 41 105 IPR036390 -
Cre01g1295 471 Gene3D - 37 110 IPR036388 -
Cre01g1295 471 Gene3D - 169 256 IPR036388 -
Cre01g1295 471 FunFam E2F transcription factor 8 37 109 - -
Cre01g1295 471 Pfam E2F/DP family winged-helix DNA-binding domain 43 107 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cre01g1295 471 Pfam E2F/DP family winged-helix DNA-binding domain 175 254 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cre01g1295 471 SUPERFAMILY Winged helix DNA-binding domain 176 255 IPR036390 -
Cre01g1295 471 FunFam E2F transcription factor-like E2FE 169 256 - -
Cre01g1295 471 MobiDBLite consensus disorder prediction 125 172 - -
Cre01g1295 471 MobiDBLite consensus disorder prediction 150 168 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1295 Cre-Chr1:26200078 Cre02g2545 Cre-Chr2:38685177 2.40E-09 dispersed
Cre01g1295 Cre-Chr1:26200078 Cre06g2535 Cre-Chr6:32994835 2.90E-100 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53022 PF02319 E2F_TDP 3.20E-20 CL0123 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g1295 K09391 - csv:101219210 685.256