Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g1295 ATGGACATCAAGCCACGTCAATCTTGTAATATCTGCGGCGGCGGCGACGACGACTTCATGGCGGCTCTGCCATCCTCTTCCGCTTTACCGGATTCTTCTTCCTCCAGACACCATACCTACAGTAGGAAGCAGAAATCCCTTGGTCTTTTATGTTCAAACTTTTTGAGCTTGTATAACCACGATGGAGTCCATTCGATTGGGCTTGACGATGCAGCATCGCGATTAGGTGTGGAAAGGCGGCGGATCTATGATATTGTGAATGTTTTGGAGAGCGTCGGGGTTCTGTCGAGAAAGGCGAAGAATCAGTACAGCTGGAATGGGTTTGGAGCAATCCCTAAGGCCTTACAAGATCTTAAAGAAGAGGGCTTGAGGGAGAATTGCAGTGCATCCGATGGTAACGATTATGCGAAAGTATCGGATGATGAAGATGAGGATGAAAGATTTTCCAATCCAACCGGAAGCCAGACCTCAACTGCAGCTGTGCCAAAATCATCTTCATCATCATTAAAAGCCGACAATAGAAGGGAAAAGTCTTTGGCGCTCCTGACGCAAAATTTTGTTAAGCTATTTATCTGCAGTCATGTGAATATGATTTCCCTTGATGAAGCTGCTAAGCTTTTATTAGGAGATGGCCACAATTCATCAATAATGAGAACAAAAGTAAGGAGGCTATATGACATTGCAAATGTGCTGTCTTCTATGAATCTGATTGAAAAGACCCATACAACAGATACTAGAAAGCCTGCTTTTAGGTGGTTGGGAGTGAGGGGTAAAGTCAAGAATGAGCCTACCATTCTTACAGAGTCCAGAAAAAGAGCATTTGGAACTGATGTAACTAATGTCAGTTATAAGAAGACTAAAGCTGAAAGTTCAGCGTATCAGGGTTTAAATCATTGCCTCAACATGCAAAAGCTAGTGCAGTGTGAGAATTCTTCGCAAGAGGATAGCCAAAATAGTCAGGAACAAGAATATGAACGAACTTCCAAGAGCTATCAATTTGGACCCTTTGCTCCGGTAACAGTAGCTAAAGTTGGTGTCTCAGACAATAACAATACGAAGCGGACTCATGACTGGGAAAGCCTTTCCTCAACATTCCGTCCTCAGTATCACAATCAAGCCTTAAACGAACTTTTCTCCCATTACGTGGAAGCTTGGAAATCATGGTTTCTGGATGCAATTCTTGTGAAAGTAATTGAATGCAAAGAAAAATTCCAAATCAGAGATGTTGGCTTATCGATTCTGGATGGTCTTCTGGTACTTGTTCTTTATCCACGCCTTGCTGTTTGTTTCCTTCCACTTGTTTCATGCCATATAATTTCTGAAGTCCCACAGGATTCTTTTCCTTTTCATCCTGCTGAACTATCCTGGGAAAATAAATTTTGGAGAAATCAAGAGAAAATAGATGGCAGTGGTTAG 1416 42.3 MDIKPRQSCNICGGGDDDFMAALPSSSALPDSSSSRHHTYSRKQKSLGLLCSNFLSLYNHDGVHSIGLDDAASRLGVERRRIYDIVNVLESVGVLSRKAKNQYSWNGFGAIPKALQDLKEEGLRENCSASDGNDYAKVSDDEDEDERFSNPTGSQTSTAAVPKSSSSSLKADNRREKSLALLTQNFVKLFICSHVNMISLDEAAKLLLGDGHNSSIMRTKVRRLYDIANVLSSMNLIEKTHTTDTRKPAFRWLGVRGKVKNEPTILTESRKRAFGTDVTNVSYKKTKAESSAYQGLNHCLNMQKLVQCENSSQEDSQNSQEQEYERTSKSYQFGPFAPVTVAKVGVSDNNNTKRTHDWESLSSTFRPQYHNQALNELFSHYVEAWKSWFLDAILVKVIECKEKFQIRDVGLSILDGLLVLVLYPRLAVCFLPLVSCHIISEVPQDSFPFHPAELSWENKFWRNQEKIDGSG 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26200078 26204039 - CrPI670011_01g012950.1 Cre01g1295 488840

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g1295 471 SMART E2F_TDP_2 42 107 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cre01g1295 471 SMART E2F_TDP_2 174 254 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cre01g1295 471 PANTHER TRANSCRIPTION FACTOR E2F 26 376 IPR015633 GO:0000978(InterPro)|GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro)|GO:0090575(PANTHER)
Cre01g1295 471 SUPERFAMILY Winged helix DNA-binding domain 41 105 IPR036390 -
Cre01g1295 471 Gene3D - 37 110 IPR036388 -
Cre01g1295 471 Gene3D - 169 256 IPR036388 -
Cre01g1295 471 FunFam E2F transcription factor 8 37 109 - -
Cre01g1295 471 Pfam E2F/DP family winged-helix DNA-binding domain 43 107 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cre01g1295 471 Pfam E2F/DP family winged-helix DNA-binding domain 175 254 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cre01g1295 471 SUPERFAMILY Winged helix DNA-binding domain 176 255 IPR036390 -
Cre01g1295 471 FunFam E2F transcription factor-like E2FE 169 256 - -
Cre01g1295 471 MobiDBLite consensus disorder prediction 125 172 - -
Cre01g1295 471 MobiDBLite consensus disorder prediction 150 168 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g1295 K09391 - - csv:101219210 685.256
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1295 Cre-Chr1:26200078 Cre02g2545 Cre-Chr2:38685177 2.40E-09 dispersed
Cre01g1295 Cre-Chr1:26200078 Cre06g2535 Cre-Chr6:32994835 2.90E-100 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre01g1295 . 37 392 E2F-DP Transcription Factor Family AT3G48160 56.7 2.4e-103 372.9
Cre10g1077 . 81 284 E2F-DP Transcription Factor Family AT5G02470 55.1 7.0e-60 228.0
Cre02g2545 . 21 441 E2F-DP Transcription Factor Family AT2G36010 54.9 5.8e-120 428.3
Cre04g1133 . 11 451 E2F-DP Transcription Factor Family AT2G36010 55.2 9.9e-120 427.6
Cre02g2545 . 10 446 E2F-DP Transcription Factor Family AT5G22220 57.2 4.2e-115 412.1
Cre04g1133 . 11 458 E2F-DP Transcription Factor Family AT5G22220 50.3 1.0e-97 354.4
Cre08g1386 . 155 344 E2F-DP Transcription Factor Family AT5G22220 58.4 3.3e-56 216.5
Cre02g2545 . 139 415 E2F-DP Transcription Factor Family AT1G47870 50.9 7.0e-63 238.4
Cre08g1386 . 151 401 E2F-DP Transcription Factor Family AT1G47870 52.6 4.5e-62 235.7
Cre10g1077 . 81 284 E2F-DP Transcription Factor Family AT5G02470 55.1 7.0e-60 228.0
Cre02g2545 . 10 446 E2F-DP Transcription Factor Family AT5G22220 57.2 4.2e-115 412.1
Cre04g1133 . 11 458 E2F-DP Transcription Factor Family AT5G22220 50.3 1.0e-97 354.4
Cre08g1386 . 155 344 E2F-DP Transcription Factor Family AT5G22220 58.4 3.3e-56 216.5
Cre02g2545 . 21 441 E2F-DP Transcription Factor Family AT2G36010 54.9 5.8e-120 428.3
Cre04g1133 . 11 451 E2F-DP Transcription Factor Family AT2G36010 55.2 9.9e-120 427.6
Cre02g2545 . 139 415 E2F-DP Transcription Factor Family AT1G47870 50.9 7.0e-63 238.4
Cre08g1386 . 151 401 E2F-DP Transcription Factor Family AT1G47870 52.6 4.5e-62 235.7
Cre01g1295 . 37 392 E2F-DP Transcription Factor Family AT3G48160 56.7 2.4e-103 372.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001341 2 8 2 2 1 2 3 2 2 2 2 2 2 2 2 3 2 4 3 2 2 1 2 2 2 2 2 5 4 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53022 PF02319 E2F_TDP 3.20E-20 CL0123 Cre TF