Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g1305 ATGCTTACAAGCAGGAGCAGAGCGGCGCTTGACGGTGGCACGAGCAGCAACCGACGGCGAGCAGGAGCGGCGCTTGATGGCGGCAGGAGTGGCAGGTCGCCGCCGATCATTTTGCAGATTCCTAAGTTGCTAGAGATTCGGGCTGCAGAGTCCATCGTTTTTTATTCTCCTACTTCGCCGCCCCCTGTTGTTCTTATCTGTGGTGCCAAAAACTGTGGCAAAAGTACTTTCTCACGCCACCTTCTCAATGTTTTCCTTCAAAGGCATAAAAAAGTGGTTTACCTGGATTCTGATGTAGGACAGCCTGAGTTTACTCCACCAGGTTTTCTGTCTCTCACTGTGGTTGACAGACTAACCCCAGATTTGTCGACTCCATGCCTAAAGACACCTGAAAGATGTTTTTTCTTTGGTGATATTTCCTCAAAAAGAGATCCAACAGCATACTTAAGTTATGCAAGCACCTTGTACGATTATTACCGCAAAGAGTACAATTCTTTTAACAAGACTGAAGAATTTGTGAAGATTGAATTGCCTCTTATTGTAAATACGCCTGGCTGGGTGAAAGGTATTGGTTATGAGATATTGGTAGATATGTTGAAATACATTACTCCATCACATGTAGTCAAAATAAATATATCTGCTGAGAGTAAGAACCTTCCGGCTGGGGAATTTTGGCTAGAAGAGGAGGAAGATTTTGGGACAACCAATCTAATAGAAATACGCTCTGCTCGGCAAGATGCTTTTAACAGATCGATACTAGTGCAAAAGGATGCAAGTCTTATGCGAGATTTGCGTATAATGGCTTATTTTAGACAGTGCTTTTCTAGAGATTGCAATATTACTACAATTAAAGAGCTTGCAAATGCACTGGCATCTCACCCTCCTTACCAAGTTCCAATATCAAGCATTAAGATTAGACACCTGCACTGTCAGGTACCAAGCAATCAGATCTTCTATAGTCTGAATGCAACAATCGTTGGCTTGGCTATATGCTCCAAAAACTCTGAAAATCCACCATGGTCCGTTGGTCTTGGAATTGTTAGAGGCATTGATACGGTCAAAGGTCTGCTATATGTTATCACACCCGTCCCCCATGGCACTTTGGAAAAGGTTGACCTTCTTTTGCAGGGCTTCATTCAAATTCCTTCTTGTTTACTGCAGGTTAAGGGATGTATGTCTCCTTACATGTGTGCTAACATTCTACCCACGAGCTAG 1215 43.29 MLTSRSRAALDGGTSSNRRRAGAALDGGRSGRSPPIILQIPKLLEIRAAESIVFYSPTSPPPVVLICGAKNCGKSTFSRHLLNVFLQRHKKVVYLDSDVGQPEFTPPGFLSLTVVDRLTPDLSTPCLKTPERCFFFGDISSKRDPTAYLSYASTLYDYYRKEYNSFNKTEEFVKIELPLIVNTPGWVKGIGYEILVDMLKYITPSHVVKINISAESKNLPAGEFWLEEEEDFGTTNLIEIRSARQDAFNRSILVQKDASLMRDLRIMAYFRQCFSRDCNITTIKELANALASHPPYQVPISSIKIRHLHCQVPSNQIFYSLNATIVGLAICSKNSENPPWSVGLGIVRGIDTVKGLLYVITPVPHGTLEKVDLLLQGFIQIPSCLLQVKGCMSPYMCANILPTS 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26285220 26291216 + CrPI670011_01g013050.1 Cre01g1305 488850

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g1305 404 Pfam mRNA cleavage and polyadenylation factor CLP1 P-loop 68 270 IPR032319 -
Cre01g1305 404 Gene3D - 39 275 IPR027417 -
Cre01g1305 404 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 111 IPR027417 -
Cre01g1305 404 MobiDBLite consensus disorder prediction 1 30 - -
Cre01g1305 404 FunFam Nucleolar protein 9 45 274 - -
Cre01g1305 404 PANTHER CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1P 52 398 IPR045116 GO:0000448(PANTHER)|GO:0005634(PANTHER)|GO:0006396(PANTHER)|GO:0006396(InterPro)|GO:0051731(InterPro)|GO:0051731(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g1305 K06947 - - csv:101217238 678.707
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0620 Cre-Chr1:5503430 Cre01g1305 Cre-Chr1:26285220 4.00E-10 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g467 . . . . Bpe12g00569 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0107 . . Chy12g01307 Cme12g01732 Blo13g00034 . . . . . . Bma08g00194 . . . . . . Car18g00131 . . . . . . . . . Cla01g01406 Cam01g1468 Cec01g1511 Cco01g1555 Clacu01g1494 Cmu01g1388 Cre01g1305 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011454 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 3 31